LICENSE
README.md
pyproject.toml
setup.py
src/oncoprep/__init__.py
src/oncoprep/cli.py
src/oncoprep/dicom_cli.py
src/oncoprep/docker.py
src/oncoprep/models_cli.py
src/oncoprep.egg-info/PKG-INFO
src/oncoprep.egg-info/SOURCES.txt
src/oncoprep.egg-info/dependency_links.txt
src/oncoprep.egg-info/entry_points.txt
src/oncoprep.egg-info/requires.txt
src/oncoprep.egg-info/top_level.txt
src/oncoprep/bids/__init__.py
src/oncoprep/bids/bids_filtering.py
src/oncoprep/bids/bids_validation.py
src/oncoprep/config/__init__.py
src/oncoprep/config/cpu_dockers.json
src/oncoprep/config/dockers.json
src/oncoprep/config/fileformats.json
src/oncoprep/config/gpu_dockers.json
src/oncoprep/config/survival_dockers.json
src/oncoprep/data/__init__.py
src/oncoprep/data/itkIdentityTransform.txt
src/oncoprep/data/atlas_masks/mni152/MNI152_T1_1mm_brain.nii.gz
src/oncoprep/data/atlas_masks/mni152/brainstem.nii.gz
src/oncoprep/data/atlas_masks/mni152/corpus_callosum.nii.gz
src/oncoprep/data/atlas_masks/mni152/cortex.nii.gz
src/oncoprep/data/atlas_masks/mni152/frontal_lobe.nii.gz
src/oncoprep/data/atlas_masks/mni152/insula.nii.gz
src/oncoprep/data/atlas_masks/mni152/internal_capsule.nii.gz
src/oncoprep/data/atlas_masks/mni152/occipital.nii.gz
src/oncoprep/data/atlas_masks/mni152/parietal.nii.gz
src/oncoprep/data/atlas_masks/mni152/temporal.nii.gz
src/oncoprep/data/atlas_masks/mni152/thalamus.nii.gz
src/oncoprep/data/atlas_masks/mni152/ventricles.nii.gz
src/oncoprep/data/atlas_masks/sri24/MNI152_in_SRI24_T1_1mm_brain.nii.gz
src/oncoprep/data/atlas_masks/sri24/brainstem.nii.gz
src/oncoprep/data/atlas_masks/sri24/corpus_callosum.nii.gz
src/oncoprep/data/atlas_masks/sri24/cortex.nii.gz
src/oncoprep/data/atlas_masks/sri24/frontal_lobe.nii.gz
src/oncoprep/data/atlas_masks/sri24/insula.nii.gz
src/oncoprep/data/atlas_masks/sri24/internal_capsule.nii.gz
src/oncoprep/data/atlas_masks/sri24/occipital.nii.gz
src/oncoprep/data/atlas_masks/sri24/parietal.nii.gz
src/oncoprep/data/atlas_masks/sri24/temporal.nii.gz
src/oncoprep/data/atlas_masks/sri24/thalamus.nii.gz
src/oncoprep/data/atlas_masks/sri24/ventricles.nii.gz
src/oncoprep/dicom/__init__.py
src/oncoprep/dicom/batch_conversion.py
src/oncoprep/interfaces/__init__.py
src/oncoprep/interfaces/bids.py
src/oncoprep/interfaces/cifti.py
src/oncoprep/interfaces/freesurfer.py
src/oncoprep/interfaces/fsl.py
src/oncoprep/interfaces/gifti.py
src/oncoprep/interfaces/mriqc.py
src/oncoprep/interfaces/msm.py
src/oncoprep/interfaces/nninteractive.py
src/oncoprep/interfaces/radiomics.py
src/oncoprep/interfaces/reports.py
src/oncoprep/interfaces/surf.py
src/oncoprep/interfaces/templateflow.py
src/oncoprep/interfaces/vasari.py
src/oncoprep/interfaces/workbench.py
src/oncoprep/io/__init__.py
src/oncoprep/io/brats.py
src/oncoprep/io/loaders.py
src/oncoprep/utils/__init__.py
src/oncoprep/utils/bids.py
src/oncoprep/utils/collate.py
src/oncoprep/utils/labels.py
src/oncoprep/utils/logging.py
src/oncoprep/utils/misc.py
src/oncoprep/utils/segment.py
src/oncoprep/workflows/__init__.py
src/oncoprep/workflows/_compat.py
src/oncoprep/workflows/anatomical.py
src/oncoprep/workflows/base.py
src/oncoprep/workflows/brats_outputs.py
src/oncoprep/workflows/conversion.py
src/oncoprep/workflows/dicom_conversion.py
src/oncoprep/workflows/fusion.py
src/oncoprep/workflows/group.py
src/oncoprep/workflows/metrics.py
src/oncoprep/workflows/mriqc.py
src/oncoprep/workflows/nninteractive.py
src/oncoprep/workflows/outputs.py
src/oncoprep/workflows/radiomics.py
src/oncoprep/workflows/reports.py
src/oncoprep/workflows/segment.py
src/oncoprep/workflows/surfaces.py
src/oncoprep/workflows/vasari.py
src/oncoprep/workflows/fit/__init__.py
src/oncoprep/workflows/fit/registration.py
tests/test_conversion.py
tests/test_dicom_conversion.py
tests/test_integration.py
tests/test_nninteractive.py
tests/test_preprocessing.py
tests/test_radiomics.py
tests/test_vasari.py