numpy
scipy
pandas
click
jax<0.11,>=0.10
diffrax<0.8,>=0.7
equinox<0.14,>=0.13
optax>=0.2
optimistix
pint
networkx
sympy
python-libsbml
tqdm
matplotlib
pebble

[app]
dash>=2.17
plotly>=5.22
dash-cytoscape>=1.0

[copasi]
python-copasi>=4.42

[cuda]
jax-cuda12-plugin[with-cuda]<0.11,>=0.10
jax-cuda12-pjrt<0.11,>=0.10

[dev]
pytest
black
pre-commit
flake8
xlrd>=2.0

[graph]
netgraph>=4.13

[search]
pypdf>=5
