CHANGELOG.md
LICENSE
MANIFEST.in
README.md
setup.py
hilary/__init__.py
hilary/__main__.py
hilary/apriori.py
hilary/cdfs_326651.csv
hilary/cdfs_326713.csv
hilary/cdfs_paired.csv
hilary/cdfs_paired_post_50K.csv
hilary/expectmax.py
hilary/inference.py
hilary/utils.py
hilary.egg-info/PKG-INFO
hilary.egg-info/SOURCES.txt
hilary.egg-info/dependency_links.txt
hilary.egg-info/entry_points.txt
hilary.egg-info/requires.txt
hilary.egg-info/top_level.txt
hilary/__pycache__/__init__.cpython-310.pyc
hilary/__pycache__/__init__.cpython-311.pyc
hilary/__pycache__/__main__.cpython-310.pyc
hilary/__pycache__/apriori.cpython-310.pyc
hilary/__pycache__/apriori_full.cpython-310.pyc
hilary/__pycache__/binomiale_expect_max.cpython-310.pyc
hilary/__pycache__/cdr3_clustering.cpython-310.pyc
hilary/__pycache__/distance_matrix.compute_distance_matrix_fast-44.py310.1.nbc
hilary/__pycache__/distance_matrix.compute_distance_matrix_fast-44.py310.nbi
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hilary/__pycache__/distance_matrix.hamming_bytes_fast-35.py310.nbi
hilary/__pycache__/expectmax.cpython-310.pyc
hilary/__pycache__/inference.cpython-310.pyc
hilary/__pycache__/inference_new.compute_distance_matrix_fast-61.py310.1.nbc
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hilary/__pycache__/inference_new.cpython-310.pyc
hilary/__pycache__/inference_new.hamming_bytes_fast-23.py310.1.nbc
hilary/__pycache__/inference_new.hamming_bytes_fast-23.py310.nbi
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hilary/__pycache__/inference_new.hamming_bytes_fast-30.py310.1.nbc
hilary/__pycache__/inference_new.hamming_bytes_fast-30.py310.nbi
hilary/__pycache__/inference_original.cpython-310.pyc
hilary/__pycache__/new_expect_max.cpython-310.pyc
hilary/__pycache__/utils.cpython-310.pyc
hilary/__pycache__/utils.cpython-311.pyc
hilary/__pycache__/utils.hamming_bytes_fast-30.py310.1.nbc
hilary/__pycache__/utils.hamming_bytes_fast-30.py310.nbi
hilary/cdfs/mouse_ogrdb2imgt.csv
hilary/tests/__pycache__/test_on_data.cpython-310-pytest-8.3.4.pyc
hilary/tests/__pycache__/test_on_data.cpython-311-pytest-7.2.1.pyc
hilary/tests/__pycache__/test_on_data.cpython-311-pytest-7.4.0.pyc
hilary/tests/data_for_tests/hilary_results/inferred_full_method_families1_1e4_ppost326651_mut326713_cdr3l15.csv