{% extends "base.html" %} {% block content %} rna-tools.online

Get secondary structures

{% csrf_token %}
{{ log | safe }}

The raw output files for each step of the pipeline can be found here

Documentation

This is https://rna-tools.readthedocs.io/en/latest/main.html#rna-pdb-toolsx --get-ss functionality.

Example https://rna-tools.readthedocs.io/en/latest/want.html?module-rna_tools.tools.rna_x3dna.rna_x3dna#module-rna_tools.tools.rna_x3dna.rna_x3dna

Get sequence in dot-bracket notation for the secondary structure:

21_3dRNA_1_rpr.pdb
((((...............))))................
21_Adamiak_1_rpr.pdb
((((.......[[[[[[[..))))..........]]]]]]]

X.-J. Lu, H. J. Bussemaker, and W. K. Olson, “DSSR: an integrated software tool for dissecting the spatial structure of RNA.,” Nucleic Acids Research, vol. 43, no. 21, p. e142, Dec. 2015.

{% endblock %}