{% extends "base.html" %} {% block content %} rna-tools.online {% if j.get_status == 'finished' %} {% endif %}

Calculate RMSD

{% csrf_token %}
{{ log | safe }}

The RMSD csv output file can be found here rmsd.csv

The raw output files for each step of the pipeline can be found here

Documentation

rna_calc_rmsd.py - calculate RMSDs of structures to the target.

Demo files rp21.zip.

If you still have problem with various number of atoms, check out this issue: get_rnapuzzle_ready see Tools

fn                        rmsd_all
21_Adamiak_1_rpr.pdb      13.3
21_ChenHighLig_1_rpr.pdb  12.85
21_Das_1_rpr.pdb          12.88
https://rna-tools.readthedocs.io/en/latest/tools.html#root-mean-square-deviation-rmsd {% endblock %}