mdna/__init__.py,sha256=P1fMvRlawoY_JhEWWLQRfV9N0CzXWZ8yXc63fMQRcnk,657
mdna/_jit.py,sha256=4pWtzm-6EuNhS39zTLez_SC-dApY--a2HiEqDkY5zWs,1062
mdna/analysis.py,sha256=NnOGMGHwOdFrMUFxE2y5pDcHhfngl__uqMzXDQJ7fik,32675
mdna/build.py,sha256=d6vCdRDH280iprUZ72ZD5zGEYVhRtfywp_Czq6dE9L8,6104
mdna/generators.py,sha256=eXMeJy9RqBchcb40W95762A3gG_739xKU3xiqyJsV_A,17395
mdna/geometry.py,sha256=7WJvHtGl7g4qMa7kG7HcvSEsfbCGeajMl0dK24o2yDk,57303
mdna/minimizer.py,sha256=D-pjf8ETTg8fujcWF8znU_1ALsqdxwNP3qo_42Uipu4,20610
mdna/modify.py,sha256=aCcNIbSnZ-_7VOOfwUzo2F-jQg21GfeqVgxhdDZlDnM,27590
mdna/nucleic.py,sha256=DSci3lmU6hE0LMGi-Ez_2JMZYQn5g8m-14ifQd14yW8,58431
mdna/spline.py,sha256=diNResglOEqJ5kTf_cIEL5Od2z3ACsSX8U6N0pSwUgI,31575
mdna/utils.py,sha256=P3xnWkXGUH3zjcA7fzJdfk00p4yJwj_R4bgVkGq3Ehc,30023
mdna/atomic/artificial_basepair/3sv3.pdb,sha256=k6JQa3IZBSFXo3vWtfUAZlffZhPNAz7m_KiybfTNJtM,1254285
mdna/atomic/artificial_basepair/4c8m.pdb,sha256=9zO0p7oL5VNU-1wj2hr5MHRhdojMUcQti_3tS3VI9wI,1263357
mdna/atomic/bases/BDNA_A.h5,sha256=rHtN9YxsLsUOx-Povr3H7NnhbVwdxl294VeM5T2xgiw,19082
mdna/atomic/bases/BDNA_A.pdb,sha256=R2AM_2Q773YHpiOA7xxOp2UEbtbKghjYMRvCg_uDFrM,1875
mdna/atomic/bases/BDNA_AH.h5,sha256=aJjms4_KdxEzHwYwP1cA__TTH7twi7GDSX7KD_14-m8,12194
mdna/atomic/bases/BDNA_AH.pdb,sha256=cP8-kXhohRDO_vpjiYPW819-Z7I5M0dFSwSQ7JT8PRQ,1754
mdna/atomic/bases/BDNA_B.h5,sha256=_Rn9Y2Y9w6kQzJEROZvma8fbKHgqzvSCw3FPqeURNBs,12268
mdna/atomic/bases/BDNA_B.pdb,sha256=_8z3SXRzEOmBZreLtp2S-XbZbNnIfwxygXn7WNgsfek,2339
mdna/atomic/bases/BDNA_C.h5,sha256=-5dMjs3VXlMuNxrseQlhveddxE8N2bXSgDyXXxxEQTo,18941
mdna/atomic/bases/BDNA_C.pdb,sha256=JU2BsByHZQscWrykmLT1LqoL5exOginj6hYXi4KgFI8,1713
mdna/atomic/bases/BDNA_CM.h5,sha256=9CFgRDrpdxBVWdW43Y2eWYkF-bwhG7AnhtyCEWQL7k8,11933
mdna/atomic/bases/BDNA_CM.pdb,sha256=Hli4uRh0x4S5RO5tf3uZA0SDH-5hSGAfXFgSNDRIf40,1673
mdna/atomic/bases/BDNA_D.h5,sha256=JR4oZJlQio1KNm2qyIR6UDHzjfOZkpoYNwFZlG6O80s,13429
mdna/atomic/bases/BDNA_D.pdb,sha256=HZf7jIg_sccIdQcsjdpoNEQuxqVVIJJgFGKF67TtgzM,4100
mdna/atomic/bases/BDNA_E.h5,sha256=vy6I5KX0r54hV1pJKWdnSYuU-a_EqqvqF6AWpSAZzBw,12938
mdna/atomic/bases/BDNA_E.pdb,sha256=51dcGeSJmv9ia0rlngPdAarEJmFUojMAtmdcrTfcX_4,3369
mdna/atomic/bases/BDNA_G.h5,sha256=0Qg_jgbIqrIF17B1QA5mZxHwhaYbejXLJySd044BUH0,19152
mdna/atomic/bases/BDNA_G.pdb,sha256=dmFi5XMQjRpI9RT5jIk4-cTk7H3Z_DaQSrgLsz0KVVY,1956
mdna/atomic/bases/BDNA_GM.h5,sha256=-_tlPHHrPMBrZVCPRbpkUZ0FHVzMdIbeDeGjtpKTDNE,12105
mdna/atomic/bases/BDNA_GM.pdb,sha256=U-Lqb9n9X-qAATm7VhsGk0kL3OEqshg8azR5F625fUo,1916
mdna/atomic/bases/BDNA_L.h5,sha256=FGV3YLH9qcK86DmOXYUVGHhB78xiwU0-YznZbWdhqZg,20246
mdna/atomic/bases/BDNA_L.pdb,sha256=ImMZ2pDnnRm6nqjGiFey1F--ypI2PYV1TMg7-YdYP58,4108
mdna/atomic/bases/BDNA_M.h5,sha256=B3WfAiXMIBLCsACNGfZC66RY3xwhoQ4q3didkKTtPKs,20375
mdna/atomic/bases/BDNA_M.pdb,sha256=r67UXezJqJIltyAVntk7puHYCXXrBjdzcBNBp220QZQ,4314
mdna/atomic/bases/BDNA_P.h5,sha256=QdYA8mIiyKHOIx1OcMj7NtrKsdxrMZ7KmCR1BRvtlLE,12267
mdna/atomic/bases/BDNA_P.pdb,sha256=GCWXpQtT5dnc0XJCbpIcDA141dd8TJa0nG4hHuJDB6w,2339
mdna/atomic/bases/BDNA_S.h5,sha256=upsDXk5_nCs5QWJ58weo1hsWXQL4SZd17dUmcOyrLWo,12253
mdna/atomic/bases/BDNA_S.pdb,sha256=SWANGOGcyc8-1WawZoKocawwTxWuDuXt--LENeIJXG8,2329
mdna/atomic/bases/BDNA_T.h5,sha256=5VLF0ucm2lypB4D_sa9UlNi9ABbDDdgbv6EBbETlMSU,19004
mdna/atomic/bases/BDNA_T.pdb,sha256=cCwB6BzWfKc7TP1EBCrfEYzkyHvZf36RELacMn6aj3s,1794
mdna/atomic/bases/BDNA_U.h5,sha256=re40lqbTxTVxPRs2T2sJMDi4BxHMQpB3ZCJHoT1ywcE,12048
mdna/atomic/bases/BDNA_U.pdb,sha256=Hsl-QaPfxFLH3QmL7RJxUVfEGkSb_V8r9ZCASXeCdXk,1592
mdna/atomic/bases/BDNA_Z.h5,sha256=q-4LkejSIZjVvqYdgPT0He4BjXDKP6aP1dw8hgKsR4M,12122
mdna/atomic/bases/BDNA_Z.pdb,sha256=xLA8o1WZf7GfN5SVXewJ5KPOneE9DTjMGgu0rKPmMNk,2123
mdna/atomic/ddd/1bna.pdb,sha256=30LxUGeS8ZG5VyJ7BhNgZSrc9vgT62nZ7FUwZ-pYRnA,76464
mdna/atomic/fluorescent/1tuq.pdb,sha256=End7lEpyi56NuZYinzwDa5qD0dEkPqNBTU3W5NqKABA,664118
mdna/atomic/fluorescent/2kv0.pdb,sha256=xHnjc13nKoERcF1Ol0EuSNlWqH-C4Qr4W91CXOzgtH8,750951
mdna/atomic/hachimoji/6mig.pdb,sha256=WbBdE1zkcwr-CabBWt7XMaz3pEqVLmG5yL9Ow0vAUPI,242433
mdna/atomic/hachimoji/6mih.pdb,sha256=vf1jMWqcbdZt71H-F6zRomv7jqKL-60RxAAjCnQjm8E,248103
mdna/atomic/hachimoji/6mik.pdb,sha256=LSfd2xGUgYnK3wpkEqJZyF5HKzxeF3dj1Y5Zsiy81Yc,248508
mdna/atomic/methylated/329d.pdb,sha256=DWzX6tdEwtQwNVlQGzQbiNMXn3Wnjfepyl73LTZTnWk,72981
mdna/math/Cayley.py,sha256=WXCRb2voSUzyhvXWufpxOJYGxhPJx3Pw8_JCRXZtduU,2334
mdna/math/Euler.py,sha256=Rd1d69ziyrepFJgBZLdqmXhEtfTYvu1ZjWc-LAHDjaU,5455
mdna/math/SE3.py,sha256=vUWP5Z0IY-qAoj6r0bmBOPs-MZ_F-IDwmjNniOkGcgo,6355
mdna/math/SO3Methods.py,sha256=oS_MHcWRU55pYAtUU2t6eF4iFUgSBunR9vuLCK2k_i8,2757
mdna/math/__init__.py,sha256=23BDm6JhJXFhYOIqk4hoxGNHl3C6FRC5BEJpY6-aTzg,1176
mdna/math/conversions.py,sha256=aQA6L6ucM94hHhTHR0vOQK5b4Hnvl_-xgUqb_5mOThA,8006
mdna/math/extend_euler.py,sha256=4sdyF42vG4xm5mwHQ-IRAwtepyuEgk9_xmBWnuEfL4E,562
mdna/math/generators.py,sha256=rcSPqaxtAMetMFO_p_dnWMsI2Qgbxa1pBBp2JD5TsBM,1452
mdna/math/matrices.py,sha256=bmlaz3oyb5KRANunBslaA8_-o5jPrMedUoM7R6w0pn0,245
mdna/simulate/README.md,sha256=HokJsIwFtQdLElsSir22p3x6twDArw815fAuideM5iE,5284
mdna/simulate/__init__.py,sha256=SRnmS7gNicMfYMmQPNmR3XCXXODOeXxutq2vYkukkpU,536
mdna/simulate/chain.py,sha256=zs_hUdHDAm8HHOd2mS6qu-EsBC6ykVuW5ziVQHlBoJk,2737
mdna/simulate/pmc.py,sha256=92IegAaFN7zlWV_A9xMbO_gu-20WJflWX8vKynYPpOo,3839
mdna/simulate/run_free.py,sha256=4BoWyWnocQofBLKr443EmoJLZWZ6xZNxdCyEWj8zH0U,7967
mdna/simulate/run_tweezer.py,sha256=d8lOWQVgWvtRGpibe4NqOu2kTibWsgWHO0iAbXZbtEU,11703
mdna/simulate/test_nonlocal.py,sha256=SnRWLroUJA1PZk38VDpUuxGe0RdCkXkdFsbM5isQymk,5053
mdna/simulate/utils.py,sha256=YDfj6v0pIKS17JH1IWkgHNhmjryWX71aK7Rm2__8a7w,1104
mdna/simulate/BPStep/BPS_LRBP.py,sha256=8wcY97_5kyLLX_dwAMEmTjhTnRtdzGumktywZFNHqmI,3157
mdna/simulate/BPStep/BPS_RBP.py,sha256=kjMlN2HloBgITYBhqsB_cQA9pgUGJN1kM_4nojBIugA,8675
mdna/simulate/BPStep/BPStep.py,sha256=wJ2uOT2MP8CQRYch4nSQRT3FIeRJHIDuP4Vr2VLYnpo,17892
mdna/simulate/BPStep/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
mdna/simulate/BPStep/RBPStiff/LICENSE,sha256=gXf5dRMhNSbfLPYYTY_5hsZ1r7UU1OaKQEAQUhuIBkM,18092
mdna/simulate/BPStep/RBPStiff/README.md,sha256=WdZrB7eCK9U_zF56n5svMf2K07Y-o4U16xZ8OauEoq8,332
mdna/simulate/BPStep/RBPStiff/__init__.py,sha256=5H3zhxrUJWtwPv6uuoBfkOoQXr5dl4zBBfyQhAVP92w,74
mdna/simulate/BPStep/RBPStiff/groundstate.py,sha256=R74qg5zqKR1PaLQuUKnDd6BOpidEq6fY2s9SHVDsxV8,668
mdna/simulate/BPStep/RBPStiff/read_params.py,sha256=r2MOSV6lHCiQe8D6hmkuldOwCREVxbp8zkoafd444nk,2306
mdna/simulate/BPStep/RBPStiff/setup.py,sha256=BIfyKWd7JSsbfMmuaWPhpZ7rNG3XVNwI_EB-YSvNe_A,343
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-AA.txt,sha256=PZ5Npk_tSNcMmojKE-Y7k2jwrR9L4xohUxYX09Yri94,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-AC.txt,sha256=erft9f2yKz84BedbwVAvG4xWQyoqjLpBvWe8T1pxmyk,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-AG.txt,sha256=c2JO1YMCtrFxAHiSBPVv9CH5IBetA8B6arO6j-YG6GM,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-AT.txt,sha256=gKNpcTxVSaoqYtgh_LqY9_rfkcymuXS58oovUWsUHyo,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-Ave.txt,sha256=fUkUPEcJg5eZdrTmwXjsFnZRGAOHPeP65mIlhvSJBsU,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-CA.txt,sha256=jPWQLYOnhwt2UNMRMOI11cuJlG_Evdox6QAfnYvKNeA,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-CC.txt,sha256=RmKi7Xaz39VfrmN3S5HmIUNfcWBWrT-f2zjbIr6-Sbc,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-CG.txt,sha256=ieVKCRh58Lrfl_IMox_FeobME3_TtvNTE-dbeNOomJE,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-CT.txt,sha256=pSPC8rRYLGQcS19-Unu3X7lvNlbibh0qcn_5nr4TSlE,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-GA.txt,sha256=Kwml_t5rGVaSAyJRBrAxPFXFEknLvkGuwZTYorVYiOs,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-GC.txt,sha256=Q-yffau7ApmG890KhY570cZpFjGoTM0v21Y0PQTHz1Y,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-GG.txt,sha256=EW8lnM9w0McgcdOb_VSKgAPz-h_YOkvfTSr5WIo1KBc,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-GT.txt,sha256=M2pu4zMpENOFi9MX4OxY1azI-LJ3RJkc0ycXQVQ4FZU,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-TA.txt,sha256=60rFut088jD7feZB8dPaNCtlUGC4TQn8HlGK7p-9N7g,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-TC.txt,sha256=fCs4jxmPtHbMvqZwNZUzTSlkri2L_xE4DEBTvUaF2GQ,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-TG.txt,sha256=TthKC8e-7yHX0Wl2MiY6yMRap-rhuOm21OcVckV0b1w,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Equilibrium-C-TT.txt,sha256=L86Z4NkcawLA286sX0Z3yRxji4sxEXixV3Ph0OmrXOc,108
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-AA.txt,sha256=FiOZi9OXwriZ_6PwyGIHpFrh_6vveScmVbiZ47hJALc,588
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-AC.txt,sha256=8OTlPjuXcJMtDJELc0ABzF1pYSSHPgkdcZugJRt29Sg,588
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-AG.txt,sha256=JDImHHFc_bJTkahi189_2HeQGF8SqlrMonQrRXRnpM4,588
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-AT.txt,sha256=bX2nkmZylxj4JKTMSCOUUPjP7bIgEkEqPcsRuGlfc9A,588
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-Ave.txt,sha256=hMyKPYXIPyR7nRQQhQB2L51Zq16zOMbn0e6iF9DIs5c,588
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-CA.txt,sha256=aE5loGwH7cjJJHBza85E4c0CiPBm9yRuv6CQ0dxjOlQ,588
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-CC.txt,sha256=e7OYaRZaSSijWQlqK-dCOdk_bn9aftIHwsgvzEDmllk,588
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-CG.txt,sha256=gf2Cu2q_lMoFodeZZR2DSH0jMupTfKmNVffUlyo6Rmo,588
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-CT.txt,sha256=0ntp5D39R3K8mA11DCj7LZMxf41ShSaCQxSTdQ76n3c,588
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-GA.txt,sha256=gUJIJ8I7RKw-fWZKcQado8qsFjbl1nqae6SnGe7M-tI,588
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-GC.txt,sha256=YllpuswHs_eVXgs-sAWUjLhx2_pHyhL1XyiI1cF3ddU,588
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-GG.txt,sha256=2BVqlnpZuuTnjvDm0bHUpTHzGy6vy49DBppKDmuAMTY,588
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-GT.txt,sha256=aIOSAfzrOYx6X9S-biYpJ1zLq7EqxDUfR3qpMkyH3Gw,588
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-TA.txt,sha256=lB11Y8nTpq9E5OIvqxXI_6BwrnuJ5OkcEjp8iz-slAU,588
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-TC.txt,sha256=96o3ydw7KhBPWhAfLRjeWAdv_W9oGhFL53-nGvt-8kM,588
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-TG.txt,sha256=y7YCAYMcLuZZcK9Nulo39Or-pChx3-FqGLHMjnfjblE,588
mdna/simulate/BPStep/RBPStiff/Parametrization/Crystallography/Stiffness-C-TT.txt,sha256=ZPxdAZ49O3nK4N94G4HoQeMuMs_uxJA-CU-4sDO6izg,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-AA.txt,sha256=7Dxn0tzFqFHTfbY0gQhwmksMZ8jagj3xY8diBj3sj5w,63
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-AC.txt,sha256=Xq-W2becgGoc6wLDXJvsp0CoTfUCt3gBESgZMzxoZrw,62
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-AG.txt,sha256=SUui8hlfF-QsauHUnNTxGycZ0ctVeCWeVmzNrGj6Gvs,62
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-AT.txt,sha256=LJecwK1NbWdWITxFgqLT03Nr8v971Kos8uk608tvok4,48
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-Ave.txt,sha256=fUkUPEcJg5eZdrTmwXjsFnZRGAOHPeP65mIlhvSJBsU,108
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-CA.txt,sha256=j5VU8-4bB-uGQ2mi_AGFk5YCH7fYpUt179TwVWbErPU,63
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-CC.txt,sha256=TMbK9cVVrglU13YvwudhDp_LAkX7oj9An1TV-CcNt1E,65
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-CG.txt,sha256=DTKYEK2AtDpn5sUwr93eS8mlt0ATA8f5T3VgUsZz4sw,48
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-CT.txt,sha256=H0gA2I3tSjqf7b3_PHYc_eGwb_B1F4rQqBhL0si_Oow,62
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-GA.txt,sha256=zttq3y5d9Av0eJ9-ZeAhmJlY_lw-N2K4QPZJGaObKTo,65
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-GC.txt,sha256=FrXiS6aX7RONjEsCNKQvexmg2W6jE1fShTBnVJxitMk,48
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-GG.txt,sha256=Mv53_N_OYDotqaTyVEHtOry_3_GEd8gFa1bPozaMgi0,63
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-GT.txt,sha256=rZI54wqRKzOFGA5FHAmN7MU1RNX_1bAXqoUrxTtt9yY,64
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-TA.txt,sha256=8efbwU8OBFzjtKEoT0mIUgLIdInE2ty1I36QmNFn_qM,47
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-TC.txt,sha256=nG74kk4e_R9Q_YWXjmyvwXDorvQ5jKVxmb9saQ9KXGQ,63
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-TG.txt,sha256=ZsgWCuS43AVKnVwYukNR8IGAyTX32O0Hnd6XcSBnfbs,61
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Equilibrium-MD-TT.txt,sha256=y1t-nFK7cz3KYc_qLZhZxFCxRLDimhMghRcko75aSrU,63
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-AA.txt,sha256=kyoG4IaWl7fTHkoJYW7b61KhztmEJIUnJ6L_xq90nYE,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-AC.txt,sha256=JCH1IonCTcc6yhQ7nwxpXaSKAjh5BDDvt_f6A_RepJY,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-AG.txt,sha256=inN4hi7IwfNKkni1HOkE5GLz9xw_2hxkw5MVnDzSqjY,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-AT.txt,sha256=qmFBkM2LQt55GxK4R_6ZDOTTOuogKyQt9zK4Ldpisrg,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-Ave.txt,sha256=ia55tZNUuPCQkb_8BNAGslP4db-fEVefuJWbEoN7vBg,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-CA.txt,sha256=WxbMhQe-cTZPsl7z-FvciMamn_JCELXZzpUTxqfzCOo,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-CC.txt,sha256=6SnCCKgGqzJdkGUKUbGSs_RwgukH5Qkzao9CQUApAf4,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-CG.txt,sha256=-6OyN9DgBxn9h0gGWYDFUBRRLdTROCZnpCL1DNLCqks,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-CT.txt,sha256=_hKtU7gxtLSCInZ0S5077ypNTLjmkLme3zGflGPCamU,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-GA.txt,sha256=AMWvCh1RTg26KJNz6Z4h6koeukX_kKZylr9MFKjkbTA,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-GC.txt,sha256=wCRtgUkJCIVGgcuaW1taYCkBQ2nPemfGtZ3WsyWKXaY,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-GG.txt,sha256=qjUcG8VwF63amVB_0L0WoaYu4mbq2vbKDh0XQhfQAfo,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-GT.txt,sha256=Hdvovi1rguKsVebVuUBEvlXbWzF7e1rP9Ix2x0HUc3Q,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-TA.txt,sha256=JLb9yue5XOyaL6jIN_PlmEI8SHLxVKQWzMXJ5VNfX6Y,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-TC.txt,sha256=NdtyWszu1CT1UBsSsEGNuOAvbyDPEmiJfHyOERV1Qbk,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-TG.txt,sha256=iEatA6-b16JMjroHJ1xXGHZ_ySDyuj8FRzdbehsxq2o,588
mdna/simulate/BPStep/RBPStiff/Parametrization/MolecularDynamics/Stiffness-MD-TT.txt,sha256=Vy5KoZey2fvAM0P2jGBtCQb53GENe2cyGnZWNtn0UrU,588
mdna/simulate/BlockMat/bmat.py,sha256=Wsu6ePsjsKqShGzSWPzUC6Nk7HYnb1iboN56vuvYi-s,15048
mdna/simulate/Constraints/Constraint.py,sha256=PqQOO0a4m4UWiEgjZB3_8PWRh-U5kYyHw491JBhhhnk,291
mdna/simulate/Constraints/RepulsionPlane.py,sha256=2LnjulqJdnXYZ527tPB1UD2Z7HuNmttnd2kNlpC_sa4,2290
mdna/simulate/Dumps/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
mdna/simulate/Dumps/xyz.py,sha256=JwjziYRZWV9f8JJ4W-2gGBS4nncT51cvlSe3PUp4A2o,6076
mdna/simulate/Evals/__init__.py,sha256=p59cM0kI3zVbLMLffIRKW7uGvkqTrrYLbnv-SD8nNaM,298
mdna/simulate/Evals/tangent_correlation.py,sha256=6R_4HadCm9bi0mp1jRovQnF8BbVb2pHBVkF-TPUyJss,7279
mdna/simulate/Evals/PyLk/LICENSE,sha256=iEi1rFmIEYg0Z4XTYyxnG3RJz0L1OjboPYZf05oe3t8,1059
mdna/simulate/Evals/PyLk/README.md,sha256=hBuWU2TMxz_C8pVUPnQutS2rUZBGeoPeIYa6QFDSqRg,75
mdna/simulate/Evals/PyLk/local_build.sh,sha256=j7TG563_ToWhQFLdgew-TMhx2sczPC5290CJdo1WlJ0,94
mdna/simulate/Evals/PyLk/setup.py,sha256=qBYrRcntUTQw3rUFj92HgFkmaAytahyq7tp-qk5323s,1303
mdna/simulate/Evals/PyLk/pylk/__init__.py,sha256=LKOjdhQubn0SdCsL6CarElDRRzJmamv7ISay-Du8iJc,252
mdna/simulate/Evals/PyLk/pylk/_writhemap_cython.pyx,sha256=OOxmKo32Q3Y7OEQnqYvyPZewdkivHGinhiaNqMw_QYQ,9245
mdna/simulate/Evals/PyLk/pylk/_writhemap_numba.py,sha256=bhB5GBdjGMm2zwx4P5nEjvQwWEJprzwDwfrqIVoxFBc,2817
mdna/simulate/Evals/PyLk/pylk/_writhemap_python.py,sha256=EQo2cMyJQsubpLgQwianxHFhRL0Tl9RnNB8R45x2yg0,2765
mdna/simulate/Evals/PyLk/pylk/eval_link.py,sha256=zQBSYqMI6LcH49ZinD1miq0V9H2VI5XaSmLbbV5_2_s,1014
mdna/simulate/Evals/PyLk/pylk/linkingnumber_cython.pyx,sha256=Uw_tGTP4Gg3Tx5W2GWD2uw0CBZv0rc53tHnXk6nuQy8,5818
mdna/simulate/Evals/PyLk/pylk/linkingnumber_numba.py,sha256=ft9JkJTYwZXqnV3fazs80oHNUrx06lQCmkHfHmX1YXM,1433
mdna/simulate/Evals/PyLk/pylk/linkingnumber_python.py,sha256=6trOAer-JKXUaDJLT1HKva5V2QFc8QNte_2iFx1Q3rU,1351
mdna/simulate/Evals/PyLk/pylk/rbp_link.py,sha256=f7JfcR4eCaqtJxYr-o5D-xy0GP2IOdsr3pNCO6z-jBE,1669
mdna/simulate/Evals/PyLk/pylk/writhe.py,sha256=mZjMLEGjVV-2VEKSQR7XenSHxPEeq646bg64-K8eIhg,897
mdna/simulate/Evals/PyLk/pylk/writhemap.py,sha256=kCSAuXkidP72e2ELrIhjqAj7O3Ok_YuS3cMpEYAQC84,1331
mdna/simulate/Evals/PyLk/test/taus.npy,sha256=CqLibgJNpQVEGFdFU70rS004i8rl_Bpi1i2Utq9NKRk,38528
mdna/simulate/Evals/PyLk/test/test.py,sha256=AfugBQ5ffyk4pvAXgGY-fLATd7yYK8Eg_nYtvaDyx0M,1091
mdna/simulate/Evals/PyLk/test/test.state,sha256=0TW2f9lKMO40NkXMwcgT-I3edxTGVCOhZWTafCe1YM4,1227712
mdna/simulate/Evals/PyLk/test/test_Omegas.npy,sha256=4PtMN2HwVY-mgNAhdQf1o8O8EpU3OgQN0aohMVED4yI,100928
mdna/simulate/Evals/PyLk/test/test_pos.npy,sha256=8ByzDI7fddHis1OgI4FK8bmSd68HMQn-_A3x9ulirRc,101168
mdna/simulate/Evals/PyLk/test/test_triads.npy,sha256=HpFO5HXcV5U4rl0_jmiibHLRPi9htOyDYxa2TsjCIgg,303248
mdna/simulate/ExVol/EVBeads copy.py,sha256=7BvhBvYZZ9FdtZ9pIfNqRXxxsABhcFoINZFTZTHzym0,36081
mdna/simulate/ExVol/EVBeads.py,sha256=Y-bXZ9BOAijGbV5EgbEo69LiRbSD3Uqnmd_YoTRANiE,37920
mdna/simulate/ExVol/EVBeads_additional.py,sha256=KMg7MBcdsx6KBHXvvo7sGHTcxxNwN0qts2j01xay3i4,17152
mdna/simulate/ExVol/ExVol.py,sha256=pZtteCJakJ83A4tbyJojC4Xyd2xVwd0-vdM9h5oOd0c,288
mdna/simulate/ExVol/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
mdna/simulate/GenConfs/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
mdna/simulate/GenConfs/load_seq.py,sha256=ia9jblOYVXCEiCzlsHDbax4lIs1XU4CiadaVzJO0yf8,149
mdna/simulate/GenConfs/straight.py,sha256=RNzB9QpLlpnbfZq4MnRpVcdmIzWAF_GdnnWpUVF306I,580
mdna/simulate/MCStep/__init__.py,sha256=Ap5zJDvvTWacfXzW9TYKV0EAyOFiBDM2JUlU92S2D7Y,253
mdna/simulate/MCStep/clustertranslation.py,sha256=xnSIrzl1exztzkk4kyBRfuva42LwdHDxtKG12wHHlyI,7095
mdna/simulate/MCStep/crankshaft.py,sha256=-Wdpr0_8bLS2zgv51W4UZkNkwrbBgHGeIY-F6NY9B6o,8856
mdna/simulate/MCStep/doublepivot.py,sha256=_SA_EdLLRs9flWppEKLZL5iMIP6jX_jn48rURTMXtGo,8252
mdna/simulate/MCStep/mcstep.py,sha256=vMwxrydecfCOKG4v3bzPBIlNiOmVriuSWgnvBdcIBbk,4993
mdna/simulate/MCStep/midstepmove.py,sha256=vWdMAJoM1wsqMz85E01Dz-hDsuZlr-xP6sdsDvLiZWs,5727
mdna/simulate/MCStep/pivot.py,sha256=osuGsSKwYp7EOnE9WHlYAebSajVOFWL_YTlof4ftAdc,11176
mdna/simulate/MCStep/singletriad.py,sha256=H-WyqbHg8SEnLIOY39vWNFizZqireyiW52f-oyEviUo,5007
mdna/simulate/apps/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
mdna/simulate/apps/nucfe/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
mdna/simulate/apps/nucfe/gen_ensemble.py,sha256=QCxPL0kmQjOQfLTsRzm-NbwMOCUY3WbbLp_wcHZgUmc,1112
mdna/simulate/apps/nucfe/nucfe.py,sha256=_1S-DZt2FoqZmPfNrwUIB5cpYVkLvk_zSbiOZCwLMAo,4627
mdna/simulate/apps/nucfe/nucfe_umbrella.py,sha256=6Xvz6FZO-GiPcH-MoM9AaOUakZIza2Cly1T0fND_ZTE,6960
mdna/simulate/apps/nucfe/read_nuc_conf.py,sha256=dPi6x7aI6cmyFI33PdtwMyXJhgNCMDyX7x17eEEQzy0,795
mdna/simulate/apps/nucfe/seqs,sha256=0yvk6unTtugHVdedYMrjpVhLxpZkIGHSLDYP05VMUGQ,3108
mdna/simulate/apps/nucfe/State/Ctract.seq,sha256=-GWjiZRxYfzyu17M6D25N-E7iYyjA_4lA_MD2NuV0N4,148
mdna/simulate/apps/nucfe/State/Nucleosome.state,sha256=JMWk8gAWzAK_fOIDn0pi6q50O-o6k2F8Xwr_7LGZGCk,23819
mdna/simulate/run/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
mdna/simulate/run/equilibrate.py,sha256=suwFwYKVo2YzsFzSAbY25An42H8_YDBsjN415EFPjmE,15290
mdna/simulate/run/equilibrate_old.py,sha256=FnQnrpg9h7yXoS7nknSPeevXtmw3cVHjbhX1AXhAqo4,15160
mdna/simulate/run/model_selection.py,sha256=5yf6rpn4aOv00tUEK16HFWsbyroPpQRet6ipzblukGw,509
mdna/simulate/run/run.py,sha256=uZpTTF8nP-wt-VgV_o13uLrgX1NgM0IeE6kMayvlEtA,18720
mdna-0.2.0.dist-info/METADATA,sha256=Sg6A5HgM1IzqkQP12JT6JzLeyXBH-p-hbG2qD_No-Jo,5867
mdna-0.2.0.dist-info/WHEEL,sha256=QccIxa26bgl1E6uMy58deGWi-0aeIkkangHcxk2kWfw,87
mdna-0.2.0.dist-info/RECORD,,
