CHANGELOG.md
COMPATIBILITY.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
src/spt_pipeline/__init__.py
src/spt_pipeline/bins.py
src/spt_pipeline/cli.py
src/spt_pipeline/colocalization.py
src/spt_pipeline/compare.py
src/spt_pipeline/diffusion.py
src/spt_pipeline/filters.py
src/spt_pipeline/gmm.py
src/spt_pipeline/histograms.py
src/spt_pipeline/imaging.py
src/spt_pipeline/legacy.py
src/spt_pipeline/manifest.py
src/spt_pipeline/marker.py
src/spt_pipeline/metadata.py
src/spt_pipeline/plotting.py
src/spt_pipeline/qc.py
src/spt_pipeline/run_log.py
src/spt_pipeline/statistics.py
src/spt_pipeline/tau_steps.py
src/spt_pipeline/track_metrics.py
src/spt_pipeline/tracking.py
src/spt_pipeline/utils.py
src/spt_pipeline.egg-info/PKG-INFO
src/spt_pipeline.egg-info/SOURCES.txt
src/spt_pipeline.egg-info/dependency_links.txt
src/spt_pipeline.egg-info/entry_points.txt
src/spt_pipeline.egg-info/requires.txt
src/spt_pipeline.egg-info/top_level.txt
src/spt_pipeline/advanced/__init__.py
src/spt_pipeline/advanced/_kernels.py
src/spt_pipeline/ergem/CHANGELOG.md
src/spt_pipeline/ergem/EXPRESSION_v2.md
src/spt_pipeline/ergem/MANIFEST.sha256
src/spt_pipeline/ergem/README.md
src/spt_pipeline/ergem/VALIDATION.md
src/spt_pipeline/ergem/VERSION.txt
src/spt_pipeline/ergem/__init__.py
src/spt_pipeline/ergem/__main__.py
src/spt_pipeline/ergem/_ficd_cell_intensity.py
src/spt_pipeline/ergem/_util.py
src/spt_pipeline/ergem/cli.py
src/spt_pipeline/ergem/condition_map.py
src/spt_pipeline/ergem/contrasts.py
src/spt_pipeline/ergem/crosscorr.py
src/spt_pipeline/ergem/expression.py
src/spt_pipeline/ergem/figures.py
src/spt_pipeline/ergem/ingest.py
src/spt_pipeline/ergem/requirements.txt
tests/test_ergem.py
tests/test_pipeline.py