AUTHORS.md
LICENSE
README.md
pyproject.toml
setup.cfg
setup.py
src/MDANCE.egg-info/PKG-INFO
src/MDANCE.egg-info/SOURCES.txt
src/MDANCE.egg-info/dependency_links.txt
src/MDANCE.egg-info/entry_points.txt
src/MDANCE.egg-info/requires.txt
src/MDANCE.egg-info/top_level.txt
src/mdance/__init__.py
src/mdance/_version.py
src/mdance/cli/__init__.py
src/mdance/cli/prime_rep.py
src/mdance/cli/prime_sim.py
src/mdance/cluster/__init__.py
src/mdance/cluster/divine.py
src/mdance/cluster/equal.py
src/mdance/cluster/helm.py
src/mdance/cluster/mdbirch.py
src/mdance/cluster/nani.py
src/mdance/cluster/prism.py
src/mdance/cluster/shine.py
src/mdance/data/__init__.py
src/mdance/data/aligned_1000_tau.dcd
src/mdance/data/aligned_tau.pdb
src/mdance/data/backbone.npy
src/mdance/data/best_frames_6.csv
src/mdance/data/blob_disk.csv
src/mdance/data/cc_sim.npy
src/mdance/data/diamond9.csv
src/mdance/data/ellipses.csv
src/mdance/data/labels_6.csv
src/mdance/data/labels_60.csv
src/mdance/data/labels_6_strat_all.csv
src/mdance/data/labels_6_strat_reduced.csv
src/mdance/data/nani_screening.csv
src/mdance/data/summary_6.csv
src/mdance/data/trimmed_sim.npy
src/mdance/data/ala_pathways/pathway_dih_0.csv
src/mdance/data/ala_pathways/pathway_dih_1.csv
src/mdance/data/ala_pathways/pathway_dih_10.csv
src/mdance/data/ala_pathways/pathway_dih_11.csv
src/mdance/data/ala_pathways/pathway_dih_12.csv
src/mdance/data/ala_pathways/pathway_dih_13.csv
src/mdance/data/ala_pathways/pathway_dih_14.csv
src/mdance/data/ala_pathways/pathway_dih_15.csv
src/mdance/data/ala_pathways/pathway_dih_16.csv
src/mdance/data/ala_pathways/pathway_dih_17.csv
src/mdance/data/ala_pathways/pathway_dih_18.csv
src/mdance/data/ala_pathways/pathway_dih_19.csv
src/mdance/data/ala_pathways/pathway_dih_2.csv
src/mdance/data/ala_pathways/pathway_dih_20.csv
src/mdance/data/ala_pathways/pathway_dih_21.csv
src/mdance/data/ala_pathways/pathway_dih_22.csv
src/mdance/data/ala_pathways/pathway_dih_23.csv
src/mdance/data/ala_pathways/pathway_dih_24.csv
src/mdance/data/ala_pathways/pathway_dih_25.csv
src/mdance/data/ala_pathways/pathway_dih_26.csv
src/mdance/data/ala_pathways/pathway_dih_27.csv
src/mdance/data/ala_pathways/pathway_dih_28.csv
src/mdance/data/ala_pathways/pathway_dih_29.csv
src/mdance/data/ala_pathways/pathway_dih_3.csv
src/mdance/data/ala_pathways/pathway_dih_30.csv
src/mdance/data/ala_pathways/pathway_dih_31.csv
src/mdance/data/ala_pathways/pathway_dih_32.csv
src/mdance/data/ala_pathways/pathway_dih_33.csv
src/mdance/data/ala_pathways/pathway_dih_34.csv
src/mdance/data/ala_pathways/pathway_dih_35.csv
src/mdance/data/ala_pathways/pathway_dih_36.csv
src/mdance/data/ala_pathways/pathway_dih_37.csv
src/mdance/data/ala_pathways/pathway_dih_38.csv
src/mdance/data/ala_pathways/pathway_dih_39.csv
src/mdance/data/ala_pathways/pathway_dih_4.csv
src/mdance/data/ala_pathways/pathway_dih_40.csv
src/mdance/data/ala_pathways/pathway_dih_41.csv
src/mdance/data/ala_pathways/pathway_dih_42.csv
src/mdance/data/ala_pathways/pathway_dih_43.csv
src/mdance/data/ala_pathways/pathway_dih_44.csv
src/mdance/data/ala_pathways/pathway_dih_45.csv
src/mdance/data/ala_pathways/pathway_dih_46.csv
src/mdance/data/ala_pathways/pathway_dih_47.csv
src/mdance/data/ala_pathways/pathway_dih_48.csv
src/mdance/data/ala_pathways/pathway_dih_49.csv
src/mdance/data/ala_pathways/pathway_dih_5.csv
src/mdance/data/ala_pathways/pathway_dih_50.csv
src/mdance/data/ala_pathways/pathway_dih_51.csv
src/mdance/data/ala_pathways/pathway_dih_52.csv
src/mdance/data/ala_pathways/pathway_dih_53.csv
src/mdance/data/ala_pathways/pathway_dih_54.csv
src/mdance/data/ala_pathways/pathway_dih_55.csv
src/mdance/data/ala_pathways/pathway_dih_56.csv
src/mdance/data/ala_pathways/pathway_dih_57.csv
src/mdance/data/ala_pathways/pathway_dih_58.csv
src/mdance/data/ala_pathways/pathway_dih_59.csv
src/mdance/data/ala_pathways/pathway_dih_6.csv
src/mdance/data/ala_pathways/pathway_dih_60.csv
src/mdance/data/ala_pathways/pathway_dih_61.csv
src/mdance/data/ala_pathways/pathway_dih_62.csv
src/mdance/data/ala_pathways/pathway_dih_63.csv
src/mdance/data/ala_pathways/pathway_dih_64.csv
src/mdance/data/ala_pathways/pathway_dih_65.csv
src/mdance/data/ala_pathways/pathway_dih_66.csv
src/mdance/data/ala_pathways/pathway_dih_67.csv
src/mdance/data/ala_pathways/pathway_dih_68.csv
src/mdance/data/ala_pathways/pathway_dih_69.csv
src/mdance/data/ala_pathways/pathway_dih_7.csv
src/mdance/data/ala_pathways/pathway_dih_70.csv
src/mdance/data/ala_pathways/pathway_dih_71.csv
src/mdance/data/ala_pathways/pathway_dih_72.csv
src/mdance/data/ala_pathways/pathway_dih_73.csv
src/mdance/data/ala_pathways/pathway_dih_74.csv
src/mdance/data/ala_pathways/pathway_dih_75.csv
src/mdance/data/ala_pathways/pathway_dih_76.csv
src/mdance/data/ala_pathways/pathway_dih_77.csv
src/mdance/data/ala_pathways/pathway_dih_78.csv
src/mdance/data/ala_pathways/pathway_dih_79.csv
src/mdance/data/ala_pathways/pathway_dih_8.csv
src/mdance/data/ala_pathways/pathway_dih_9.csv
src/mdance/inputs/__init__.py
src/mdance/inputs/preprocess.py
src/mdance/outputs/__init__.py
src/mdance/outputs/plot.py
src/mdance/outputs/postprocess.py
src/mdance/prime/__init__.py
src/mdance/prime/rep_frames.py
src/mdance/prime/sim_calc.py
src/mdance/tools/__init__.py
src/mdance/tools/bts.py
src/mdance/tools/esim.py
src/mdance/tools/isim.py
tests/test_bts.py
tests/test_db.py
tests/test_divine.py
tests/test_equal.py
tests/test_esim.py
tests/test_helm.py
tests/test_mdbirch.py
tests/test_nani.py
tests/test_plot.py
tests/test_preprocess.py
tests/test_prism.py
tests/test_shine.py