cthmm>=0.0.3
hmmlearn>=0.3.3
joblib>=1.5
matplotlib>=3.8
numba>=0.60
numpy>=1.26
pandas>=2.2
panel>=1.4
plotly>=5.24
pybedtools>=0.12.0
pyarrow>=17.0
PyYAML>=6.0
scikit-learn>=1.5
seaborn>=0.13
tqdm>=4.66
umap-learn>=0.5
gdown>=6.0
nbformat>=4.2.0

[docs]
ipykernel
myst-parser>=4.0
nbsphinx>=0.9.6
Sphinx>=7.4.7
sphinx-autobuild>=2024.4.16
sphinx-rtd-theme>=2.0.0

[test]
pytest>=8.0
