Metadata-Version: 2.4
Name: polarityjam
Version: 0.4.2
Summary: Feature extraction pipeline for vascular cell data
Author-email: Jan Philipp Albrecht <j.p.albrecht@fu-berlin.de>, Wolfgang Giese <wolfgang.giese@mdc-berlin.de>
License-Expression: MIT
Project-URL: Documentation, https://polarityjam.readthedocs.io
Project-URL: Homepage, https://www.polarityjam.com
Project-URL: DeveloperDocumentation, https://github.com/polarityjam/polarityjam/wiki
Project-URL: Repository, https://github.com/polarityjam/polarityjam
Project-URL: Tracker, https://github.com/polarityjam/polarityjam/issues
Keywords: vascular cell,imaging,data analysis,polarity
Classifier: Development Status :: 4 - Beta
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: Implementation :: PyPy
Classifier: Topic :: Utilities
Requires-Python: ~=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy~=1.26
Requires-Dist: cellpose~=3.0
Requires-Dist: pandas~=2.2
Requires-Dist: scipy~=1.11
Requires-Dist: scikit-image~=0.19
Requires-Dist: matplotlib~=3.10
Requires-Dist: PyYAML~=6.0
Requires-Dist: cmocean~=4.0
Requires-Dist: pyunpack==0.2.2
Requires-Dist: networkx==2.6.3
Requires-Dist: Shapely==1.8.2
Requires-Dist: requests~=2.25
Requires-Dist: urllib3~=1.26
Requires-Dist: aenum==3.1.0
Requires-Dist: tifffile==2023.2.28
Requires-Dist: album~=0.12
Requires-Dist: jupyter~=1.0
Requires-Dist: scikit-learn~=1.6
Dynamic: license-file

# Feature extraction pipeline

The feature extraction pipeline to study endothelial cell polarity, junctions and morphology.

Check out our journal [paper](https://doi.org/10.1038/s41467-025-56643-x).
Check out our arxiv [preprint](https://doi.org/10.1101/2024.01.24.577027).

For installation, usage, and more read our [wiki](https://polarityjam.readthedocs.io/en/latest/).

Administrators and Maintainers please look here: [admin-wiki](https://github.com/polarityjam/polarityjam/wiki)
