LICENSE
MANIFEST.in
README.md
pyproject.toml
src/polarityjam/__init__.py
src/polarityjam/__main__.py
src/polarityjam/argument_parsing.py
src/polarityjam/commandline.py
src/polarityjam/polarityjam_logging.py
src/polarityjam/settings.py
src/polarityjam.egg-info/PKG-INFO
src/polarityjam.egg-info/SOURCES.txt
src/polarityjam.egg-info/dependency_links.txt
src/polarityjam.egg-info/entry_points.txt
src/polarityjam.egg-info/requires.txt
src/polarityjam.egg-info/top_level.txt
src/polarityjam/compute/__init__.py
src/polarityjam/compute/compute.py
src/polarityjam/compute/corner.py
src/polarityjam/compute/neighborhood.py
src/polarityjam/compute/shape.py
src/polarityjam/compute/statistics.py
src/polarityjam/controller/__init__.py
src/polarityjam/controller/collector.py
src/polarityjam/controller/extractor.py
src/polarityjam/controller/plotter.py
src/polarityjam/controller/segmenter.py
src/polarityjam/model/__init__.py
src/polarityjam/model/collection.py
src/polarityjam/model/image.py
src/polarityjam/model/masks.py
src/polarityjam/model/moran.py
src/polarityjam/model/parameter.py
src/polarityjam/model/properties.py
src/polarityjam/model/weights.py
src/polarityjam/segmentation/__init__.py
src/polarityjam/segmentation/cellpose.py
src/polarityjam/segmentation/cellpose.yml
src/polarityjam/segmentation/deepcell.py
src/polarityjam/segmentation/deepcell.yml
src/polarityjam/segmentation/microsam.py
src/polarityjam/segmentation/microsam.yml
src/polarityjam/segmentation/sam.py
src/polarityjam/segmentation/sam.yml
src/polarityjam/test/__init__.py
src/polarityjam/test/__main__.py
src/polarityjam/test/test_all.py
src/polarityjam/test/test_common.py
src/polarityjam/test/test_config.py
src/polarityjam/test/integration/__init__.py
src/polarityjam/test/integration/test_commandline.py
src/polarityjam/test/integration/test_extraction.py
src/polarityjam/test/integration/test_masks.py
src/polarityjam/test/integration/test_notebook.py
src/polarityjam/test/integration/test_properties.py
src/polarityjam/test/resources/060721_EGM2_18dyn_02_small_seg.npy
src/polarityjam/test/resources/060721_EGM2_18dyn_02_small_seg_nuc.npy
src/polarityjam/test/resources/data.zip
src/polarityjam/test/resources/parameters_extract_all.yml
src/polarityjam/test/resources/parameters_extract_no_intensity.yml
src/polarityjam/test/resources/parameters_extract_no_morphology.yml
src/polarityjam/test/resources/parameters_extract_no_polarity.yml
src/polarityjam/test/resources/parameters_extract_no_topology.yml
src/polarityjam/test/resources/parameters_golgi_nuclei.yml
src/polarityjam/test/resources/parameters_golgi_nuclei_key.yml
src/polarityjam/test/resources/parameters_no_golgi.yml
src/polarityjam/test/resources/parameters_no_nuclei.yml
src/polarityjam/test/resources/test_key_file.csv
src/polarityjam/test/resources/masks/mask.png
src/polarityjam/test/resources/masks/mask_nuclei.png
src/polarityjam/test/resources/masks/mask_organelle.png
src/polarityjam/test/resources/single_cell/cytosol.npy
src/polarityjam/test/resources/single_cell/cytosol.png
src/polarityjam/test/resources/single_cell/junction_de_n.npy
src/polarityjam/test/resources/single_cell/junction_de_n.png
src/polarityjam/test/resources/single_cell/junction_de_p.npy
src/polarityjam/test/resources/single_cell/junction_de_p.png
src/polarityjam/test/resources/single_cell/junction_dne.npy
src/polarityjam/test/resources/single_cell/junction_dne.png
src/polarityjam/test/resources/single_cell/junction_ue_n.npy
src/polarityjam/test/resources/single_cell/junction_ue_n.png
src/polarityjam/test/resources/single_cell/junction_ue_p.npy
src/polarityjam/test/resources/single_cell/junction_ue_p.png
src/polarityjam/test/resources/single_cell/junction_une.npy
src/polarityjam/test/resources/single_cell/junction_une.png
src/polarityjam/test/resources/single_cell/label.npy
src/polarityjam/test/resources/single_cell/label.png
src/polarityjam/test/resources/single_cell/marker_de_n.npy
src/polarityjam/test/resources/single_cell/marker_de_n.png
src/polarityjam/test/resources/single_cell/marker_de_p.npy
src/polarityjam/test/resources/single_cell/marker_de_p.png
src/polarityjam/test/resources/single_cell/marker_dne.npy
src/polarityjam/test/resources/single_cell/marker_dne.png
src/polarityjam/test/resources/single_cell/marker_ue_n.npy
src/polarityjam/test/resources/single_cell/marker_ue_n.png
src/polarityjam/test/resources/single_cell/marker_ue_p.npy
src/polarityjam/test/resources/single_cell/marker_ue_p.png
src/polarityjam/test/resources/single_cell/marker_une.npy
src/polarityjam/test/resources/single_cell/marker_une.png
src/polarityjam/test/resources/symmetry/sc_cone.npy
src/polarityjam/test/resources/symmetry/sc_oval.npy
src/polarityjam/test/resources/symmetry/sc_round.npy
src/polarityjam/test/unit/__init__.py
src/polarityjam/test/unit/test_feature_extraction.py
src/polarityjam/utils/__init__.py
src/polarityjam/utils/decorators.py
src/polarityjam/utils/io.py
src/polarityjam/utils/normalization.py
src/polarityjam/utils/url.py
src/polarityjam/utils/resources/parameters.yml
src/polarityjam/vizualization/__init__.py
src/polarityjam/vizualization/plot.py