Bowtie2
Settings
Alignment Distribution
in %
Alignment Distribution
Alignment Statistics
in %
Alignment Statistics
Sample | #Pairs | Pairs Aligned | Single Mates Aligned (Relative To "Not Aligned Conc. Or Disconc.") | |||||
---|---|---|---|---|---|---|---|---|
Concordantly Aligned 0 Times | Concordantly Aligned 1 Times | Concordantly Aligned >1 Times | Mate Aligned 0 Times | Mate Aligned 1 Times | Mate Aligned >1 Times | |||
Disconcordantly Aligned | Not Aligned Conc. Or Disconc. | |||||||
Sample | #Pairs | Disconcordantly Aligned | NOT Aligned Conc. Or Disconc. | Concordantly Alligned 1 Times | Concordantly Alligned >1 Times | Mate Aligned 0 Times | Mate Aligned 1 Times | Mate Aligned >1 Times |
Concordantly Alligned 0 Times | ||||||||
Pairs Aligned | Single Mates Aligned (Relative To "Not Aligned Conc. Or Disconc.") | |||||||
{{ seqrun.sample }} | {{ seqrun.reads }} | {{ (parseFloat(seqrun["aligned_disconc_1_time"]) / parseFloat(seqrun["reads"]) * 100).toFixed(2) }} | {{ (parseFloat(seqrun["pairs_aligned_0_times_conc_or_disconc"]) / parseFloat(seqrun["reads"]) * 100).toFixed(2) }} | {{ parseFloat(seqrun["aligned_conc_1_time[%]"]).toFixed(2) }} | {{ parseFloat(seqrun["aligned_conc_more_than_1_times[%]"]).toFixed(2) }} | {{ parseFloat(seqrun["mates_aligned_0_times[%]"]).toFixed(2) }} | {{ parseFloat(seqrun["mates_aligned_1_time[%]"]).toFixed(2) }} | {{ parseFloat(seqrun["mates_aligned_more_than_1_times[%]"]).toFixed(2) }} |
Sample | #Pairs | Pairs Aligned | Single Mates Aligned (Relative To "Not Aligned Conc. Or Disconc.") | |||||
---|---|---|---|---|---|---|---|---|
Concordantly Aligned 0 Times | Concordantly Aligned 1 Times | Concordantly Aligned >1 Times | Mate Aligned 0 Times | Mate Aligned 1 Times | Mate Aligned >1 Times | |||
Disconcordantly Aligned | Not Aligned Conc. Or Disconc. | |||||||
Sample | #Pairs | Disconcordantly Aligned | NOT Aligned Conc. Or Disconc. | Concordantly Alligned 1 Times | Concordantly Alligned >1 Times | Mate Aligned 0 Times | Mate Aligned 1 Times | Mate Aligned >1 Times |
Concordantly Alligned 0 Times | ||||||||
Pairs Aligned | Single Mates Aligned (Relative To "Not Aligned Conc. Or Disconc.") | |||||||
{{ seqrun.sample }} | {{ seqrun.reads }} | {{ seqrun["aligned_disconc_1_time"] }} | {{ seqrun["pairs_aligned_0_times_conc_or_disconc"] }} | {{ seqrun["aligned_conc_1_time"] }} | {{ seqrun["aligned_conc_more_than_1_times"] }} | {{ seqrun["mates_aligned_0_times"] }} | {{ seqrun["mates_aligned_1_time"] }} | {{ seqrun["mates_aligned_more_than_1_times"] }} |
Sample | #Pairs | Aligned 0 Times | Aligned 1 Times | Aligned >1 Times |
---|---|---|---|---|
Sample | #Pairs | Aligned 0 Times | Aligned 1 Times | Aligned >1 Times |
{{ seqrun.sample }} | {{ seqrun.reads }} | {{ parseFloat(seqrun["aligned_0_times[%]"]).toFixed(2) }} | {{ parseFloat(seqrun["aligned_1_time[%]"]).toFixed(2) }} | {{ parseFloat(seqrun["aligned_more_than_1_times[%]"]).toFixed(2) }} |
Sample | #Pairs | Aligned 0 Times | Aligned 1 Times | Aligned >1 Times |
---|---|---|---|---|
Sample | #Pairs | Aligned 0 Times | Aligned 1 Times | Aligned >1 Times |
{{ seqrun.sample }} | {{ seqrun.reads }} | {{ seqrun["aligned_0_times"] }} | {{ seqrun["aligned_1_time"] }} | {{ seqrun["aligned_more_than_1_times"] }} |