LICENSE
README.md
pyproject.toml
tests/test_api_reference.py
tests/test_bcrgraph_clones.py
tests/test_bone_marrow_design.py
tests/test_case_study_signatures.py
tests/test_clone_state_sharing.py
tests/test_clones_v3.py
tests/test_dandelion_adapter.py
tests/test_density.py
tests/test_ebv_contig_matching.py
tests/test_export.py
tests/test_integrate.py
tests/test_io.py
tests/test_maptune.py
tests/test_migration.py
tests/test_parallel_and_robustness.py
tests/test_phylo.py
tests/test_profile_reproducibility.py
tests/test_programs.py
tests/test_reclustering_presets.py
tests/test_release_metadata.py
tests/test_sequence_v2.py
tests/test_specificity.py
tests/test_threadfin.py
tests/test_user_inputs.py
tests/test_v4_core.py
threadfin/__init__.py
threadfin/_utils.py
threadfin/api.py
threadfin/bcrgraph.py
threadfin/clones.py
threadfin/core.py
threadfin/dandelion.py
threadfin/density.py
threadfin/dynamics.py
threadfin/export.py
threadfin/expression.py
threadfin/heritability.py
threadfin/integrate.py
threadfin/io.py
threadfin/maptune.py
threadfin/metrics.py
threadfin/migration.py
threadfin/phylo.py
threadfin/plotting.py
threadfin/pp.py
threadfin/profiles.py
threadfin/programmes.py
threadfin/programs.py
threadfin/reclustering.py
threadfin/sequence.py
threadfin/simulate.py
threadfin/specificity.py
threadfin/stats.py
threadfin/tl.py
threadfin.egg-info/PKG-INFO
threadfin.egg-info/SOURCES.txt
threadfin.egg-info/dependency_links.txt
threadfin.egg-info/requires.txt
threadfin.egg-info/top_level.txt