/__pycache__/
/.idea/
/Example_Data/*
# Data downloaded and written by the notebooks in Examples/.
/Examples/pancreatic_ct_cbct/
# Re-identification key: maps study/series hashes back to MRNs. It must stay in
# a secured, access-controlled location and never enter version control.
**/anonymization_key.json
# Cohort manifests carry identifiers unless exported with anonymize=True.
# Use `git add -f` for a de-identified manifest you intend to share.
**/manifest*.csv
# Downloaded DICOM. Deliberately NOT a bare ``*.dcm``: the package ships
# ``src/DicomRTTool/template_RS.dcm`` and the tests may add DICOM fixtures.
/Examples/**/*.dcm
# Local DICOM working data — never commit. Patient-identifying tags are
# populated in these files; see the repo's PHI guidance before touching them.
/AnonDICOM/
# Created by https://www.toptal.com/developers/gitignore/api/python
# Edit at https://www.toptal.com/developers/gitignore?templates=python

### Python ###
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
/test.py
/Test2.py
# C extensions
*.so
*.nii*
# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
Secrets/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec
*~$*
# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/
pytestdebug.log

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/
doc/_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version

# pipenv
#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
#   However, in case of collaboration, if having platform-specific dependencies or dependencies
#   having no cross-platform support, pipenv may install dependencies that don't work, or not
#   install all needed dependencies.
#Pipfile.lock

# PEP 582; used by e.g. github.com/David-OConnor/pyflow
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site
Data.xlsx
# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# pytype static type analyzer
.pytype/

# Claude Code working directory
/.claude/
# Site validation output — machine- and site-specific, produced by
# validation/run_validation.py. File it with your commissioning record,
# do not commit it.
/validation/validation_report.md
