LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
structuredca/__init__.py
structuredca/cli.py
structuredca/structuredca.py
structuredca/aligner/__init__.py
structuredca/aligner/linear_extrapolation.py
structuredca/aligner/structure_sequence_alignment.py
structuredca/dca_model/__init__.py
structuredca/dca_model/dca_model.py
structuredca/dca_model/gauge.py
structuredca/dca_model/data_structures/__init__.py
structuredca/dca_model/data_structures/sparse_J.py
structuredca/dca_model/data_structures/sparse_matrix.py
structuredca/dca_model/dca_solvers/__init__.py
structuredca/dca_model/dca_solvers/dca_solver.py
structuredca/dca_model/dca_solvers/plmdca/__init__.py
structuredca/dca_model/dca_solvers/plmdca/plmdca.cpp
structuredca/dca_model/dca_solvers/plmdca/plmdca.py
structuredca/dca_model/dca_solvers/plmdca/plmdcaBackend.cpp
structuredca/dca_model/dca_solvers/plmdca/include/plmdca.h
structuredca/dca_model/dca_solvers/plmdca/lbfgs/include/arithmetic_ansi.h
structuredca/dca_model/dca_solvers/plmdca/lbfgs/include/arithmetic_sse_double.h
structuredca/dca_model/dca_solvers/plmdca/lbfgs/include/arithmetic_sse_float.h
structuredca/dca_model/dca_solvers/plmdca/lbfgs/include/lbfgs.h
structuredca/dca_model/dca_solvers/plmdca/lbfgs/lib/lbfgs.cpp
structuredca/sequence/__init__.py
structuredca/sequence/amino_acid.py
structuredca/sequence/fasta_reader.py
structuredca/sequence/msa.py
structuredca/sequence/mutation.py
structuredca/sequence/pairwise_alignment.py
structuredca/sequence/sequence.py
structuredca/structure/__init__.py
structuredca/structure/residue.py
structuredca/structure/structure.py
structuredca/structure/rsa/__init__.py
structuredca/structure/rsa/rsa_biopython.py
structuredca/structure/rsa/rsa_solver.py
structuredca/utils/__init__.py
structuredca/utils/logger.py
structuredca/utils/utils.py