# Program parameters
backend = CPU
interaction_type = RNA2
seed = 0

# Simulation parameters
sim_type = MD
thermostat = langevin
equilibration_steps = 0
steps = 250000
T = 296.15K
time_scale = linear
salt_concentration = 1.0
list_type = no
dh_half_charged_ends = 0
external_model = external_model.txt
newtonian_steps = 1
diff_coeff = 2.5
dt = 0.003
refresh_vel = true
CUDA_list = verlet
CUDA_device = 0
use_average_seq = true
verlet_skin = 0.1

# Input/output
conf_file = init.conf
topology = sys.top
trajectory_file = output.dat
print_conf_interval = 1000
print_energy_every = 1000
lastconf_file = last_conf.dat
restart_step_counter = 0
energy_file = energy.dat

# confGenerator options
generate_consider_bonded_interactions = true

log_file = sim.log