# Core options
T = 296.15K
equilibration_steps = 0
steps = 250000
conf_file = init.conf
topology = sys.top
trajectory_file = output.dat
time_scale = linear
print_conf_interval = 1000
print_energy_every = 1000
interaction_type = DNA2_nomesh
major_minor_grooving = 1
salt_concentration = 0.5
seed = 0
lastconf_file = last_conf.dat
list_type = no
restart_step_counter = 0
energy_file = energy.dat
dh_half_charged_ends = 1

# Molecular dynamics options
sim_type = MD
backend = CPU
thermostat = langevin
newtonian_steps = 1
diff_coeff = 2.5
dt = 0.003
refresh_vel = true
CUDA_list = verlet
CUDA_device = 0

# Common options for DNA simulations
use_average_seq = true

# confGenerator options
generate_consider_bonded_interactions = true
