pyensembl>=2.27.2
# Shared traversal preserves transcript-model and legacy candidate evidence.
varcode>=11.1.0,<12
pandas>=3,<4
pysam>=0.15.2
edlib>=1.3.9.post1,<2

# Reads Isovar's packaged Sid test reads and makes them again, and acquires regions
# for research audits.
osteosarc>=0.15.5,<0.16

# Shared species-scoped ORF models and reference MS observations.
orfdata>=0.39.1,<1

# Versioned human CTA nomination with policy, reference and source provenance.
oncoref>=1.21.0,<2

# Figures and PDF reports are part of the standard CLI installation.
matplotlib>=3.6,<4
reportlab>=4,<6
pypdf>=5,<7
