Metadata-Version: 2.4
Name: ellipse-nuclei-segmentation
Version: 0.1.1
Summary: A plugin to navigate a .nd2 file (confocal movie) and annotate nuclei using ellipses.
Author: Ruben Moreno-Aguado
Author-email: ruben.morenoaguado@gmail.com
License-Expression: MIT
Project-URL: Bug Tracker, https://github.com/rmaguado/ellipse-nuclei-segmentation/issues
Project-URL: Documentation, https://github.com/rmaguado/ellipse-nuclei-segmentation#README.md
Project-URL: Source Code, https://github.com/rmaguado/ellipse-nuclei-segmentation
Project-URL: User Support, https://github.com/rmaguado/ellipse-nuclei-segmentation/issues
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Framework :: napari
Classifier: Intended Audience :: Developers
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Topic :: Scientific/Engineering :: Image Processing
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy
Requires-Dist: nd2
Requires-Dist: einops
Requires-Dist: magicgui
Requires-Dist: qtpy
Requires-Dist: scikit-image
Provides-Extra: all
Requires-Dist: napari[all]; extra == "all"
Dynamic: license-file

# ellipse-nuclei-segmentation

[![License MIT](https://img.shields.io/pypi/l/ellipse-nuclei-segmentation.svg?color=green)](https://github.com/rmaguado/ellipse-nuclei-segmentation/raw/main/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/ellipse-nuclei-segmentation.svg?color=green)](https://pypi.org/project/ellipse-nuclei-segmentation)
[![Python Version](https://img.shields.io/pypi/pyversions/ellipse-nuclei-segmentation.svg?color=green)](https://python.org)
[![tests](https://github.com/rmaguado/ellipse-nuclei-segmentation/workflows/tests/badge.svg)](https://github.com/rmaguado/ellipse-nuclei-segmentation/actions)
[![codecov](https://codecov.io/gh/rmaguado/ellipse-nuclei-segmentation/branch/main/graph/badge.svg)](https://codecov.io/gh/rmaguado/ellipse-nuclei-segmentation)
[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/ellipse-nuclei-segmentation)](https://napari-hub.org/plugins/ellipse-nuclei-segmentation)
[![npe2](https://img.shields.io/badge/plugin-npe2-blue?link=https://napari.org/stable/plugins/index.html)](https://napari.org/stable/plugins/index.html)
[![Copier](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/copier-org/copier/master/img/badge/badge-grayscale-inverted-border-purple.json)](https://github.com/copier-org/copier)

A plugin to navigate a .nd2 file (confocal movie) and annotate nuclei using ellipses.

----------------------------------

This [napari] plugin was generated with [copier] using the [napari-plugin-template] (None).

<!--
Don't miss the full getting started guide to set up your new package:
https://github.com/napari/napari-plugin-template#getting-started

and review the napari docs for plugin developers:
https://napari.org/stable/plugins/index.html
-->

## Installation

You can install `ellipse-nuclei-segmentation` via [pip]:

```bash
pip install ellipse-nuclei-segmentation
```

If napari is not already installed, you can install `ellipse-nuclei-segmentation` with napari and Qt via:

```bash
pip install "ellipse-nuclei-segmentation[all]"
```


To install latest development version:

```bash
pip install git+https://github.com/rmaguado/ellipse-nuclei-segmentation.git
```



## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [MIT] license,
"ellipse-nuclei-segmentation" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[copier]: https://copier.readthedocs.io/en/stable/
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[napari-plugin-template]: https://github.com/napari/napari-plugin-template

[file an issue]: https://github.com/rmaguado/ellipse-nuclei-segmentation/issues

[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/
