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AUTHORS.rst
CHANGELOG.md
LICENSE.md
README.md
codecov.yml
justfile
postBuild
pyproject.toml
tox.ini
uv.lock
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changelog.d/54.changed.md
changelog.d/58.added.md
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changelog.d/59.added.md
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changelog.d/61.added.md
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changelog.d/64.added.md
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docs/Makefile
docs/changelog.md
docs/conf.py
docs/getting_started.md
docs/index.md
docs/api/index.md
docs/api/combat_based/combat.md
docs/api/combat_based/combat_gam.md
docs/api/combat_based/index.md
docs/api/datasets/clean_tmp.md
docs/api/datasets/download_bids_dataset.md
docs/api/datasets/index.md
docs/api/datasets/list_available_files.md
docs/api/datasets/load_mareos.md
docs/api/datasets/load_on_harmony.md
docs/api/datasets/make_multisite_classification.md
docs/api/interpolation_based/index.md
docs/api/interpolation_based/inter_site_matched_interpolation.md
docs/api/interpolation_based/intra_site_interpolation.md
docs/api/metrics/index.md
docs/api/metrics/report_metrics_by_site.md
docs/api/ot_based/index.md
docs/api/ot_based/otda.md
docs/api/utils/index.md
docs/api/utils/verbosity.md
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docs/examples/index.md
docs/examples/basic/index.md
docs/examples/combat/index.md
docs/examples/interpolation/index.md
docs/examples/multisite_data/index.md
docs/examples/ot/index.md
docs/methods/index.md
docs/methods/combat_based/combat.md
docs/methods/combat_based/combat_gam.md
docs/methods/combat_based/covbat.md
docs/methods/combat_based/deepcombat.md
docs/methods/combat_based/index.md
docs/methods/combat_based/longcombat.md
docs/methods/combat_based/neuroharmony.md
docs/methods/combat_based/prettyharmony.md
docs/methods/interpolation_based/index.md
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docs/methods/interpolation_based/intra_site_interpolation.md
docs/methods/iqm_based/bartharm.md
docs/methods/iqm_based/index.md
docs/utilities/datalad_integration.md
docs/utilities/index.md
docs/utilities/load_mareos_datasets.md
docs/utilities/load_onharmony_dataset.md
docs/utilities/report_metric_by_site.md
docs/utilities/simulate_multisite_data.md
examples/GALLERY_HEADER.rst
examples/01-basic-examples/01-plot_eos_in_ml.py
examples/01-basic-examples/02-run_metrics_by_site.py
examples/01-basic-examples/03-plot_biases_in_metrics_by_site.py
examples/01-basic-examples/04-plot_eos_with_dimensionality_reduction.py
examples/01-basic-examples/05-plot_multisite_data_characterization.py
examples/01-basic-examples/06-plot_mareos_with_tsne.py
examples/01-basic-examples/GALLERY_HEADER.rst
examples/02-multisite-data/01-plot_generate_multisite_data.py
examples/02-multisite-data/02-run_load_mareos.py
examples/02-multisite-data/03-plot_generate_imbalance_multisite_data.py
examples/02-multisite-data/04-run_load_on_harmony.py
examples/02-multisite-data/GALLERY_HEADER.rst
examples/03-combat-based/01-plot_neurocombat_binary_classification.py
examples/03-combat-based/02-plot_neurocombat_imbalance_across_sites.py
examples/03-combat-based/03-plot_neurocombat_with_mareos.py
examples/03-combat-based/04-plot_combatgam_binary_classification.py
examples/03-combat-based/05-plot_combatgam_imbalance_across_sites.py
examples/03-combat-based/06-plot_combatgam_with_mareos.py
examples/03-combat-based/GALLERY_HEADER.rst
examples/04-interpolation-based/01-plot_isi_binary_classification.py
examples/04-interpolation-based/02-plot_isi_multiclass_classification.py
examples/04-interpolation-based/03-plot_ismi_binary_classification.py
examples/04-interpolation-based/04-plot_isi_advance_usage.py
examples/04-interpolation-based/GALLERY_HEADER.rst
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examples/05-ot-based/GALLERY_HEADER.rst
src/uniharmony/__init__.py
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src/uniharmony/combat/__init__.py
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src/uniharmony/datasets/__init__.py
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src/uniharmony/datasets/_load_mareos.py
src/uniharmony/datasets/_load_onharmony.py
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src/uniharmony/datasets/_multisite_data_characterization.py
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src/uniharmony/normative/__init__.py
src/uniharmony/normative/__init__.pyi
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src/uniharmony/ot/__init__.pyi
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src/uniharmony/plot/__init__.py
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tests/combat/bladder-pheno.txt
tests/combat/test_combat_gam.py
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