LICENSE
README.md
pyproject.toml
pygliph/__init__.py
pygliph/_utils.py
pygliph/combined.py
pygliph/datasets.py
pygliph/de_novo.py
pygliph/gliph2.py
pygliph/io.py
pygliph/motifs.py
pygliph/plotting.py
pygliph/scoring.py
pygliph/turbo_gliph.py
pygliph.egg-info/PKG-INFO
pygliph.egg-info/SOURCES.txt
pygliph.egg-info/dependency_links.txt
pygliph.egg-info/requires.txt
pygliph.egg-info/top_level.txt
pygliph/data/blosum_vec.txt
pygliph/data/gTRBD.tsv
pygliph/data/gTRBJ.tsv
pygliph/data/gTRBV.tsv
pygliph/data/gliph_input_data.tsv
pygliph/data/gliph_reference_cdr3_length_freq.tsv
pygliph/data/gliph_reference_refseqs.tsv.gz
pygliph/data/gliph_reference_vgene_freq.tsv
pygliph/data/ref_cluster_sizes_original.tsv
pygliph/data/ref_cluster_sizes_simulated.tsv
tests/test_r_parity.py
tests/test_smoke.py