LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
sisana/__init__.py
sisana/default_parameters.py
sisana/sisana.py
sisana.egg-info/PKG-INFO
sisana.egg-info/SOURCES.txt
sisana.egg-info/dependency_links.txt
sisana.egg-info/entry_points.txt
sisana.egg-info/requires.txt
sisana.egg-info/top_level.txt
sisana/analyze_networks/__init__.py
sisana/analyze_networks/clustermap.py
sisana/analyze_networks/compare_groups.py
sisana/analyze_networks/gsea.py
sisana/analyze_networks/heatmap.py
sisana/analyze_networks/lioness_df_indeg_outdeg_calculator.py
sisana/analyze_networks/plot_expression_degree.py
sisana/analyze_networks/summarize_results.py
sisana/analyze_networks/survival_analysis.py
sisana/analyze_networks/volcano_plot.py
sisana/analyze_networks/analyze/__init__.py
sisana/analyze_networks/analyze/compare.py
sisana/analyze_networks/analyze/network_calculations.py
sisana/analyze_networks/analyze/visualization.py
sisana/analyze_networks/genesets/Hallmark.v2023.2.Hs.symbols.gmt
sisana/analyze_networks/genesets/README.txt
sisana/analyze_networks/genesets/__init__.py
sisana/analyze_networks/genesets/c2.cp.kegg_medicus.v2023.2.Hs.symbols.gmt
sisana/analyze_networks/genesets/c2.cp.reactome.v2023.2.Hs.symbols.gmt
sisana/docs/__init__.py
sisana/docs/compare_params_blank.yml
sisana/docs/extract_params_blank.yml
sisana/docs/generate_params_blank.yml
sisana/docs/gsea_params_blank.yml
sisana/docs/log_file_generator.py
sisana/docs/preprocess_params_blank.yml
sisana/docs/subcommands_desc.py
sisana/docs/survival_params_blank.yml
sisana/docs/visualize_params_blank.yml
sisana/example_input/BRCA_TCGA_200_LumA_LumB_samps_mapping_w_header.csv
sisana/example_input/BRCA_TCGA_200_LumA_LumB_samps_survival_data.csv
sisana/example_input/BRCA_TCGA_20_LumA_LumB_samps_5000_genes_exp.tsv
sisana/example_input/Hallmark.v2023.2.Hs.symbols.gmt
sisana/example_input/__init__.py
sisana/example_input/c2.cp.kegg_medicus.v2023.2.Hs.symbols.gmt
sisana/example_input/c2.cp.reactome.v2023.2.Hs.symbols.gmt
sisana/example_input/fetch_example_files.py
sisana/example_input/genes_to_extract.txt
sisana/example_input/heatmap_genes.txt
sisana/example_input/input_path.py
sisana/example_input/lioness_df_indegree_3_decimal_places_subset_200_LumALumB_samps.csv
sisana/example_input/motif_prior_names_2024.tsv
sisana/example_input/params.yml
sisana/example_input/ppi_prior_2024.tsv
sisana/example_input/quantity_plot_genes.txt
sisana/example_input/volcano_plot_genes.txt
sisana/example_input/__pycache__/__init__.cpython-39.pyc
sisana/example_input/__pycache__/fetch_example_files.cpython-39.pyc
sisana/example_input/__pycache__/input_path.cpython-39.pyc
sisana/postprocessing/__init__.py
sisana/postprocessing/combine.py
sisana/postprocessing/extract_TFs_genes.py
sisana/postprocessing/lioness_to_pickle_df.py
sisana/postprocessing/quantnorm_edges.py
sisana/postprocessing/reduce_number_decimal_places.py
sisana/postprocessing/post/__init__.py
sisana/postprocessing/post/postprocess.py
sisana/preprocessing/__init__.py
sisana/preprocessing/file_validation.py
sisana/preprocessing/preprocessing.py
tests/test_sisana.py