Metadata-Version: 2.4
Name: gemmapy
Version: 2.0.7
Summary: a Python Wrapper for the Gemma API
Keywords: gemma,bioinformatics
Requires-Python: >=3.10
Description-Content-Type: text/x-rst
License-File: LICENSE.md
Requires-Dist: certifi>=14.05.14
Requires-Dist: six>=1.10
Requires-Dist: python_dateutil>=2.5.3
Requires-Dist: setuptools>=21.0.0
Requires-Dist: urllib3>=1.15.1
Requires-Dist: pandas
Requires-Dist: numpy
Requires-Dist: anndata
Requires-Dist: typing
Dynamic: license-file

gemmapy: a Python Wrapper for the Gemma API
===========================================

This is a Python wrapper for `Gemma <https://gemma.msl.ubc.ca/>`_'s
RESTful `API <https://gemma.msl.ubc.ca/resources/restapidocs/>`_. Gemma is a web
site, database and a set of tools for the meta-analysis, re-use and
sharing of genomics data, currently primarily targeted at the analysis
of gene expression profiles. Gemma contains data from thousands of
public studies, referencing thousands of published papers.


Installation instructions
-------------------------
.. This is a content of docs/install.rst. Update it whenever install.rst changes.

The package requires Python 3.10+.

#. Install it from PyPI

   .. code-block:: bash

      pip install gemmapy

#. Install it from a local copy

   .. code-block:: bash

      pip install git+https://github.com/PavlidisLab/gemmapy.git


Usage
-----

To get started with *gemmapy*, read the 
`Tutorial <https://pavlidislab.github.io/gemmapy/tutorial.html>`_.

The full documentation can be found at 
https://pavlidislab.github.io/gemmapy/.


Citation
--------

To cite Gemma, please use: `Lim, N. et al., Curation of over 10 000
transcriptomic studies to enable data reuse, Database, 2021
<https://doi.org/10.1093/database/baab006>`_.
