LICENSE
README.md
pyproject.toml
setup.py
_Sailfish/__init__.pyi
_Sailfish/py.typed
msasim/__init__.py
msasim/constants.py
msasim/correlation.py
msasim/distributions.py
msasim/msa.py
msasim/protocol.py
msasim/sailfish.py
msasim/simulator.py
msasim/tree.py
msasim.egg-info/PKG-INFO
msasim.egg-info/SOURCES.txt
msasim.egg-info/dependency_links.txt
msasim.egg-info/not-zip-safe
msasim.egg-info/requires.txt
msasim.egg-info/top_level.txt
src/main.cpp