# Large data and output directories
tutorials/
website/build/
encode_analysis/
mgh_data/
notebooks/
downloads/
pipeline/

# Data files
*.nc
*.pkl
*.bcf
*.bam
*.fastq
*.tar.gz
*.bed.gz
*.bedgraph.gz
*.bw

# Python artifacts
__pycache__/
*.egg-info/
*.pyc
.pytest_cache/

# Build artifacts
build/
dist/

# IDE / OS
.DS_Store
.vscode/
.idea/
