pyscnet.BuildNet¶
pyscnet.BuildNet.gne_dockercaller¶
Created on Fri May 31 12:51:34 2019
@author: mwu
-
pyscnet.BuildNet.gne_dockercaller.
rundocker
(gnetdata, method, cell=None, feature=None, cell_clusterid=None, select_by=None, Mms_TF=None, **kwargs)[source]¶ - Parameters
gnetdata – Gnetdata object, default None.
method – str, default None. methods: [GENIE3, GRNBOOST2, PIDC, CORR]
cell – list, default None. a list of cell names
feature – list, default None. a list of gene names
cell_clusterid – str, default None. cell with cell_clusterid will be selected
select_by – str, default None. key of filtering cells
Mms_TF – list, default None. a list of transcription factor names
kwargs – additional parameters passed to scnode2vec()
- Returns
Gnetdata object with links saved in NetAttrs