pyscnet.BuildNet

pyscnet.BuildNet.gne_dockercaller

Created on Fri May 31 12:51:34 2019

@author: mwu

pyscnet.BuildNet.gne_dockercaller.rundocker(gnetdata, method, cell=None, feature=None, cell_clusterid=None, select_by=None, Mms_TF=None, **kwargs)[source]
Parameters
  • gnetdata – Gnetdata object, default None.

  • method – str, default None. methods: [GENIE3, GRNBOOST2, PIDC, CORR]

  • cell – list, default None. a list of cell names

  • feature – list, default None. a list of gene names

  • cell_clusterid – str, default None. cell with cell_clusterid will be selected

  • select_by – str, default None. key of filtering cells

  • Mms_TF – list, default None. a list of transcription factor names

  • kwargs – additional parameters passed to scnode2vec()

Returns

Gnetdata object with links saved in NetAttrs