pyscnet.Preprocessing¶
pyscnet.Preprocessing.gnetdata¶
Created on Wed May 22 13:53:34 2019
@author: mwu
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class
pyscnet.Preprocessing.gnetdata.
Gnetdata
(ExpMatrix, CellAttrs=None, GeneAttrs=None)[source]¶ Bases:
object
for building GRNs. It consists four sub-classes: 1) ExpMatrix: A gene count matrix 2) CellAttrs: A dict gives information about cells. eg. cluster_nr, annotation 3) GeneAttrs: A dict gives information about genes. eg. module_nr, marker_annotation 4) NetAttrs: A dict includes Networks attributes. eg. node centralities.
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property
deepcopy
¶ make a deepcopy of gnetData
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property
info
¶ return the shape of ExpMatrix and the keys of CellAttrs, GeneAttrs, NetAttrs
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property
shape
¶ return the shape of ExpMatrix
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property