scipy>=1.3.1
cvxpy>=1.4
treeswift>=1.1.39
Mosek>=10.1.16
Biopython>=1.71
matplotlib>=2.2.2
setuptools
jax<0.5,>=0.4.30
loguru<1.0,>=0.7.3
networkx<4.0,>=3.2.1
optax<1.0,>=0.2.4
pandas<3.0,>=2.2.3
numpy>=1.21
numba>=0.56

[bio]
scikit-bio>=0.5.8
