Metadata-Version: 2.1
Name: LAML
Version: 1.0.5
Summary: LAML: Lineage Analysis via Maximum Likelihood
Author: ['Gillian Chu', 'Uyen Mai', 'Henri Schmidt', 'Ben Raphael']
License: GNU General Public License, version 3
Keywords: Phylogenetics Evolution Computational Maximum-likelihood Lineage Tracing
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License (GPL)
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Provides-Extra: bio
License-File: LICENSE

LAML is a maximum likelihood algorithm under the Probabilistic Mixed-type Missing (PMM) model. Given a lineage tracing experiment character matrix with heterogeneous per-site alphabets and mutation probabilities, LAML finds a maximum likelihood tree topology and estimates parameters including time-resolved branch lengths, heritable silencing rate and non-heritable dropout probability.
