__pycache__/
*.py[cod]
*.egg-info/
build/
dist/
.pytest_cache/
.venv/
venv/

# Reference fixtures live outside the repository (~200 MB across three sets).
# Point CLOCKCYTEPY_FIXTURES at them, or regenerate with R/01..R/07.
fixtures/expected_*/
fixtures/MANIFEST.txt
fixtures/tree_diff_*.csv

# Analysis outputs written beside the data
*_results/rds/
*_results/plots/
*_results/tables/
Aggregated/

# Regenerable, and outside the repository like the rest of the reference data.
fixtures/reference_plots/
fixtures/python_plots/
fixtures/plot_parity_*.csv
