LICENSE
README.md
pyproject.toml
leafcutter2_pipeline.egg-info/PKG-INFO
leafcutter2_pipeline.egg-info/SOURCES.txt
leafcutter2_pipeline.egg-info/dependency_links.txt
leafcutter2_pipeline.egg-info/entry_points.txt
leafcutter2_pipeline.egg-info/requires.txt
leafcutter2_pipeline.egg-info/top_level.txt
scripts/__init__.py
scripts/annotation_nmd_plot.py
scripts/compute_nmd_fraction.py
scripts/generate_example_outputs.py
scripts/gtex_gct_to_bed.py
scripts/lc2_pipeline.py
scripts/longorf_to_gtf.py
scripts/merge_tissue_results.py
scripts/pe_inclusion_analysis.py
scripts/recount3_to_bed.py
scripts/recount3_to_star_sj.py
scripts/rename_gtf_seqnames.py
scripts/run_zebrafish_full_chain.py
scripts/validate_gtf_for_lc2.py
scripts/zebrafish_project_runs.py
scripts/zebrafish_quest_pipeline.py
tests/test_smoke.py
webapp/__init__.py
webapp/backend/__init__.py
webapp/backend/main.py
webapp/frontend/index.html