CHANGELOG.md
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docs/DOCUMENTATION-STANDARDS.md
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docs/_archive/README.md
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docs/_archive/temp-files/CLEANUP_SUMMARY-20250929.md
docs/_archive/temp-files/FEATURES_READY_FOR_TESTING.md
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docs/architecture/README.md
docs/architecture/branch-analysis-optimization.md
docs/architecture/caching-strategy.md
docs/architecture/llm-classifier-refactoring.md
docs/architecture/ml-pipeline.md
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docs/design/git_pm_correlation_design.md
docs/design/platform-agnostic-pm-framework.md
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docs/developer/README.md
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docs/research/add-alias-infrastructure-2026-04-08.md
docs/research/bedrock-classify-fallback-debug-2026-02-26.md
docs/research/bedrock-llm-not-called-2026-02-27.md
docs/research/bug-investigation-issues-2-3-4-2026-02-03.md
docs/research/cache-missing-repos-investigation-2026-02-27.md
docs/research/cicd-integration-patterns-2025-02-09.md
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src/gitflow_analytics/__init__.py
src/gitflow_analytics/_version.py
src/gitflow_analytics/cli.py
src/gitflow_analytics/cli_analysis.py
src/gitflow_analytics/cli_analysis_helpers.py
src/gitflow_analytics/cli_analysis_modes.py
src/gitflow_analytics/cli_analysis_orchestrator.py
src/gitflow_analytics/cli_fetch.py
src/gitflow_analytics/cli_formatting.py
src/gitflow_analytics/cli_identity.py
src/gitflow_analytics/cli_identity_alias_ops.py
src/gitflow_analytics/cli_identity_commands.py
src/gitflow_analytics/cli_pipeline_commands.py
src/gitflow_analytics/cli_setup.py
src/gitflow_analytics/cli_training.py
src/gitflow_analytics/cli_utils.py
src/gitflow_analytics/config.py
src/gitflow_analytics/constants.py
src/gitflow_analytics/pipeline.py
src/gitflow_analytics/pipeline_classify.py
src/gitflow_analytics/pipeline_collect.py
src/gitflow_analytics/pipeline_report.py
src/gitflow_analytics/pipeline_types.py
src/gitflow_analytics/verify_activity.py
src/gitflow_analytics.egg-info/PKG-INFO
src/gitflow_analytics.egg-info/SOURCES.txt
src/gitflow_analytics.egg-info/dependency_links.txt
src/gitflow_analytics.egg-info/entry_points.txt
src/gitflow_analytics.egg-info/requires.txt
src/gitflow_analytics.egg-info/top_level.txt
src/gitflow_analytics/classification/__init__.py
src/gitflow_analytics/classification/batch_classifier.py
src/gitflow_analytics/classification/batch_classifier_impl.py
src/gitflow_analytics/classification/classifier.py
src/gitflow_analytics/classification/feature_extractor.py
src/gitflow_analytics/classification/linguist_analyzer.py
src/gitflow_analytics/classification/model.py
src/gitflow_analytics/cli_wizards/__init__.py
src/gitflow_analytics/cli_wizards/install_wizard.py
src/gitflow_analytics/cli_wizards/install_wizard_output.py
src/gitflow_analytics/cli_wizards/install_wizard_pm.py
src/gitflow_analytics/cli_wizards/install_wizard_repos.py
src/gitflow_analytics/cli_wizards/menu.py
src/gitflow_analytics/cli_wizards/run_launcher.py
src/gitflow_analytics/config/__init__.py
src/gitflow_analytics/config/aliases.py
src/gitflow_analytics/config/errors.py
src/gitflow_analytics/config/loader.py
src/gitflow_analytics/config/loader_sections.py
src/gitflow_analytics/config/profiles.py
src/gitflow_analytics/config/repository.py
src/gitflow_analytics/config/schema.py
src/gitflow_analytics/config/validator.py
src/gitflow_analytics/core/__init__.py
src/gitflow_analytics/core/analysis_components.py
src/gitflow_analytics/core/analyze_pipeline.py
src/gitflow_analytics/core/analyze_pipeline_helpers.py
src/gitflow_analytics/core/analyze_pipeline_reports.py
src/gitflow_analytics/core/analyzer.py
src/gitflow_analytics/core/analyzer_commit.py
src/gitflow_analytics/core/analyzer_git.py
src/gitflow_analytics/core/branch_mapper.py
src/gitflow_analytics/core/cache.py
src/gitflow_analytics/core/cache_commits.py
src/gitflow_analytics/core/cache_weekly.py
src/gitflow_analytics/core/churn_calculator.py
src/gitflow_analytics/core/data_fetcher.py
src/gitflow_analytics/core/data_fetcher_git.py
src/gitflow_analytics/core/data_fetcher_parallel.py
src/gitflow_analytics/core/data_fetcher_processing.py
src/gitflow_analytics/core/git_auth.py
src/gitflow_analytics/core/git_timeout_wrapper.py
src/gitflow_analytics/core/identity.py
src/gitflow_analytics/core/identity_stats.py
src/gitflow_analytics/core/metrics_storage.py
src/gitflow_analytics/core/progress.py
src/gitflow_analytics/core/repo_cloner.py
src/gitflow_analytics/core/schema_version.py
src/gitflow_analytics/core/subprocess_git.py
src/gitflow_analytics/extractors/__init__.py
src/gitflow_analytics/extractors/base.py
src/gitflow_analytics/extractors/ml_prediction_cache.py
src/gitflow_analytics/extractors/ml_tickets.py
src/gitflow_analytics/extractors/ml_tickets_analysis.py
src/gitflow_analytics/extractors/story_points.py
src/gitflow_analytics/extractors/tickets.py
src/gitflow_analytics/extractors/tickets_analysis.py
src/gitflow_analytics/identity_llm/__init__.py
src/gitflow_analytics/identity_llm/analysis_pass.py
src/gitflow_analytics/identity_llm/analyzer.py
src/gitflow_analytics/identity_llm/models.py
src/gitflow_analytics/integrations/__init__.py
src/gitflow_analytics/integrations/github_integration.py
src/gitflow_analytics/integrations/jira_integration.py
src/gitflow_analytics/integrations/orchestrator.py
src/gitflow_analytics/integrations/cicd/__init__.py
src/gitflow_analytics/integrations/cicd/base.py
src/gitflow_analytics/integrations/cicd/github_actions.py
src/gitflow_analytics/metrics/__init__.py
src/gitflow_analytics/metrics/activity_scoring.py
src/gitflow_analytics/metrics/branch_health.py
src/gitflow_analytics/metrics/dora.py
src/gitflow_analytics/models/__init__.py
src/gitflow_analytics/models/database.py
src/gitflow_analytics/models/database_base.py
src/gitflow_analytics/models/database_commit_models.py
src/gitflow_analytics/models/database_identity_models.py
src/gitflow_analytics/models/database_metrics_models.py
src/gitflow_analytics/pm_framework/__init__.py
src/gitflow_analytics/pm_framework/base.py
src/gitflow_analytics/pm_framework/models.py
src/gitflow_analytics/pm_framework/orchestrator.py
src/gitflow_analytics/pm_framework/registry.py
src/gitflow_analytics/pm_framework/adapters/__init__.py
src/gitflow_analytics/pm_framework/adapters/jira_adapter.py
src/gitflow_analytics/pm_framework/adapters/jira_adapter_converters.py
src/gitflow_analytics/pm_framework/adapters/jira_cache.py
src/gitflow_analytics/qualitative/__init__.py
src/gitflow_analytics/qualitative/chatgpt_analyzer.py
src/gitflow_analytics/qualitative/enhanced_analyzer.py
src/gitflow_analytics/qualitative/enhanced_analyzer_developer.py
src/gitflow_analytics/qualitative/enhanced_analyzer_executive.py
src/gitflow_analytics/qualitative/enhanced_analyzer_projects.py
src/gitflow_analytics/qualitative/enhanced_analyzer_workflow.py
src/gitflow_analytics/qualitative/example_enhanced_usage.py
src/gitflow_analytics/qualitative/classifiers/__init__.py
src/gitflow_analytics/qualitative/classifiers/change_type.py
src/gitflow_analytics/qualitative/classifiers/domain_classifier.py
src/gitflow_analytics/qualitative/classifiers/intent_analyzer.py
src/gitflow_analytics/qualitative/classifiers/llm_commit_classifier.py
src/gitflow_analytics/qualitative/classifiers/risk_analyzer.py
src/gitflow_analytics/qualitative/classifiers/llm/__init__.py
src/gitflow_analytics/qualitative/classifiers/llm/base.py
src/gitflow_analytics/qualitative/classifiers/llm/batch_processor.py
src/gitflow_analytics/qualitative/classifiers/llm/bedrock_client.py
src/gitflow_analytics/qualitative/classifiers/llm/cache.py
src/gitflow_analytics/qualitative/classifiers/llm/cost_tracker.py
src/gitflow_analytics/qualitative/classifiers/llm/openai_client.py
src/gitflow_analytics/qualitative/classifiers/llm/prompts.py
src/gitflow_analytics/qualitative/classifiers/llm/response_parser.py
src/gitflow_analytics/qualitative/core/__init__.py
src/gitflow_analytics/qualitative/core/llm_fallback.py
src/gitflow_analytics/qualitative/core/nlp_engine.py
src/gitflow_analytics/qualitative/core/pattern_cache.py
src/gitflow_analytics/qualitative/core/processor.py
src/gitflow_analytics/qualitative/models/__init__.py
src/gitflow_analytics/qualitative/models/schemas.py
src/gitflow_analytics/qualitative/utils/__init__.py
src/gitflow_analytics/qualitative/utils/batch_processor.py
src/gitflow_analytics/qualitative/utils/cost_tracker.py
src/gitflow_analytics/qualitative/utils/metrics.py
src/gitflow_analytics/qualitative/utils/text_processing.py
src/gitflow_analytics/reports/__init__.py
src/gitflow_analytics/reports/analytics_patterns.py
src/gitflow_analytics/reports/analytics_writer.py
src/gitflow_analytics/reports/base.py
src/gitflow_analytics/reports/branch_health_writer.py
src/gitflow_analytics/reports/classification_csv.py
src/gitflow_analytics/reports/classification_writer.py
src/gitflow_analytics/reports/cli_integration.py
src/gitflow_analytics/reports/csv_reports_developer.py
src/gitflow_analytics/reports/csv_reports_dora.py
src/gitflow_analytics/reports/csv_reports_weekly.py
src/gitflow_analytics/reports/csv_writer.py
src/gitflow_analytics/reports/data_models.py
src/gitflow_analytics/reports/database_report_generator.py
src/gitflow_analytics/reports/example_usage.py
src/gitflow_analytics/reports/factory.py
src/gitflow_analytics/reports/formatters.py
src/gitflow_analytics/reports/html_generator.py
src/gitflow_analytics/reports/html_sections.py
src/gitflow_analytics/reports/interfaces.py
src/gitflow_analytics/reports/json_export_builders.py
src/gitflow_analytics/reports/json_export_developer.py
src/gitflow_analytics/reports/json_export_executive.py
src/gitflow_analytics/reports/json_export_insights.py
src/gitflow_analytics/reports/json_export_utils.py
src/gitflow_analytics/reports/json_exporter.py
src/gitflow_analytics/reports/narrative_analysis.py
src/gitflow_analytics/reports/narrative_classification.py
src/gitflow_analytics/reports/narrative_executive.py
src/gitflow_analytics/reports/narrative_recommendations.py
src/gitflow_analytics/reports/narrative_team.py
src/gitflow_analytics/reports/narrative_writer.py
src/gitflow_analytics/reports/quality_report.py
src/gitflow_analytics/reports/story_point_correlation.py
src/gitflow_analytics/reports/story_point_helpers.py
src/gitflow_analytics/reports/team_aggregator.py
src/gitflow_analytics/reports/velocity_report.py
src/gitflow_analytics/reports/weekly_trends_writer.py
src/gitflow_analytics/security/__init__.py
src/gitflow_analytics/security/config.py
src/gitflow_analytics/security/llm_analyzer.py
src/gitflow_analytics/security/security_analyzer.py
src/gitflow_analytics/security/extractors/__init__.py
src/gitflow_analytics/security/extractors/dependency_checker.py
src/gitflow_analytics/security/extractors/secret_detector.py
src/gitflow_analytics/security/extractors/vulnerability_scanner.py
src/gitflow_analytics/security/reports/__init__.py
src/gitflow_analytics/security/reports/security_report.py
src/gitflow_analytics/training/__init__.py
src/gitflow_analytics/training/model_loader.py
src/gitflow_analytics/training/pipeline.py
src/gitflow_analytics/types/__init__.py
src/gitflow_analytics/types/commit_types.py
src/gitflow_analytics/ui/__init__.py
src/gitflow_analytics/ui/progress_display.py
src/gitflow_analytics/ui/progress_display_rich.py
src/gitflow_analytics/ui/progress_display_rich_render.py
src/gitflow_analytics/ui/progress_display_types.py
src/gitflow_analytics/utils/__init__.py
src/gitflow_analytics/utils/ai_detection.py
src/gitflow_analytics/utils/commit_utils.py
src/gitflow_analytics/utils/date_utils.py
src/gitflow_analytics/utils/debug.py
src/gitflow_analytics/utils/glob_matcher.py
tests/__init__.py
tests/conftest.py
tests/debug_bulk_exists.py
tests/debug_commit_story_points.py
tests/debug_database_storage.py
tests/debug_jira_enrichment.py
tests/debug_story_points.py
tests/test_add_alias_command.py
tests/test_atomic_caching.py
tests/test_cache_invalidation.py
tests/test_classification_system.py
tests/test_cli.py
tests/test_config.py
tests/test_config_extends.py
tests/test_config_profiles.py
tests/test_config_story_points.py
tests/test_identity_llm_analyzer.py
tests/test_install_wizard.py
tests/test_interactive_launcher.py
tests/test_llm_commit_classification.py
tests/test_metrics.py
tests/test_ml_accuracy.py
tests/test_ml_components.py
tests/test_ml_comprehensive.py
tests/test_ml_integration.py
tests/test_pipeline.py
tests/test_pm_env_resolution.py
tests/test_report_abstraction.py
tests/test_reports.py
tests/test_training_pipeline.py
tests/test_two_step_process.py
tests/core/__init__.py
tests/core/test_analyzer.py
tests/core/test_analyzer_merge_stats.py
tests/core/test_cache.py
tests/core/test_churn_calculator.py
tests/core/test_data_fetcher.py
tests/core/test_data_fetcher_merge_stats.py
tests/core/test_identity.py
tests/core/test_merge_commit_detection.py
tests/core/test_progress.py
tests/core/test_weekly_cache.py
tests/extractors/__init__.py
tests/extractors/test_commit_categorization.py
tests/extractors/test_ticket_detection_config.py
tests/integration/__init__.py
tests/integration/conftest.py
tests/integration/test_merge_exclusion_workflow.py
tests/integrations/__init__.py
tests/integrations/test_github_integration.py
tests/metrics/__init__.py
tests/models/__init__.py
tests/models/test_cached_commits_ai_columns.py
tests/models/test_daily_metrics_ai_columns.py
tests/models/test_pull_request_cache_v3.py
tests/models/test_pull_request_cache_v4.py
tests/models/test_weekly_trends_churn_column.py
tests/models/test_weekly_trends_velocity_columns.py
tests/qualitative/__init__.py
tests/qualitative/test_basic_integration.py
tests/qualitative/test_bedrock_batch.py
tests/qualitative/test_complexity_rating.py
tests/reports/__init__.py
tests/reports/test_pr_reporting.py
tests/reports/test_quality_report.py
tests/reports/test_team_aggregator.py
tests/reports/test_velocity_report.py
tests/test-qa-install/test_error_handling.py
tests/test-qa-install/test_wizard_automated.py
tests/test_cli_wizards/__init__.py
tests/test_cli_wizards/test_menu.py
tests/utils/__init__.py
tests/utils/test_ai_detection.py
tests/utils/test_ai_detection_nlp.py
tests/utils/test_commit_utils.py