LICENSE
README.md
pyproject.toml
./caddsv/__init__.py
./caddsv/cli.py
./caddsv/config.yml
./caddsv/workflow/Snakefile
./caddsv/workflow/envs/NT.yml
./caddsv/workflow/envs/SV.yml
./caddsv/workflow/envs/prepBED.yml
./caddsv/workflow/envs/preprocessing.yml
./caddsv/workflow/envs/training.yml
./caddsv/workflow/models/DEL_PHRED.tsv
./caddsv/workflow/models/DUP_PHRED.tsv
./caddsv/workflow/models/INS_PHRED.tsv
./caddsv/workflow/models/INV_PHRED.tsv
./caddsv/workflow/models/seqonlymodel.joblib
./caddsv/workflow/models/seqresmodel.joblib
./caddsv/workflow/models/standardmodel.joblib
./caddsv/workflow/rules/annotations.smk
./caddsv/workflow/rules/fileprep.smk
./caddsv/workflow/rules/preprocessing.smk
./caddsv/workflow/rules/seqonly.smk
./caddsv/workflow/scripts/CB_final.py
./caddsv/workflow/scripts/DB_features_df_generator.py
./caddsv/workflow/scripts/PLIextract.py
./caddsv/workflow/scripts/SB_features_df_generator.py
./caddsv/workflow/scripts/add_phred.py
./caddsv/workflow/scripts/annotateHIC.py
./caddsv/workflow/scripts/count_map.py
./caddsv/workflow/scripts/input_bed_preprocessing.sh
./caddsv/workflow/scripts/input_vcf_preprocessing.sh
./caddsv/workflow/scripts/log_transform.py
./caddsv/workflow/scripts/max_map.py
./caddsv/workflow/scripts/mean_map.py
./caddsv/workflow/scripts/mean_map2.py
./caddsv/workflow/scripts/preprocess_sequences.py
./caddsv/workflow/scripts/retrieve_seq.py
./caddsv/workflow/scripts/retrieve_seq_for_nt.py
./caddsv/workflow/scripts/retrieve_seq_for_ref.py
./caddsv/workflow/scripts/rule_boundary_score.py
./caddsv/workflow/scripts/rule_cadd_PC_phylop.py
./caddsv/workflow/scripts/rule_cadd_features.py
./caddsv/workflow/scripts/rule_chromHMM.py
./caddsv/workflow/scripts/rule_encode.py
./caddsv/workflow/scripts/rule_screen.py
./caddsv/workflow/scripts/run_segmentNT.py
./caddsv/workflow/scripts/run_segmentNT_test.py
./caddsv/workflow/scripts/scale_features.py
./caddsv/workflow/scripts/scoring.py
./caddsv/workflow/scripts/scoring_CBonly.py
./caddsv/workflow/scripts/scoring_allscores.py
./caddsv/workflow/scripts/scoring_seqonly.py
./caddsv/workflow/scripts/sum_map.py
./caddsv/workflow/scripts/test_performance.py
./caddsv/workflow/scripts/training.py
./caddsv/workflow/scripts/training_SBtests.py
./caddsv/workflow/scripts/validation_performance.py
./caddsv/workflow/scripts/zoonomia_tabix_map.py
caddsv/__init__.py
caddsv/cli.py
caddsv/config.yml
caddsv.egg-info/PKG-INFO
caddsv.egg-info/SOURCES.txt
caddsv.egg-info/dependency_links.txt
caddsv.egg-info/entry_points.txt
caddsv.egg-info/requires.txt
caddsv.egg-info/top_level.txt
caddsv/workflow/Snakefile
caddsv/workflow/envs/NT.yml
caddsv/workflow/envs/SV.yml
caddsv/workflow/envs/prepBED.yml
caddsv/workflow/envs/preprocessing.yml
caddsv/workflow/envs/training.yml
caddsv/workflow/models/DEL_PHRED.tsv
caddsv/workflow/models/DUP_PHRED.tsv
caddsv/workflow/models/INS_PHRED.tsv
caddsv/workflow/models/INV_PHRED.tsv
caddsv/workflow/models/seqonlymodel.joblib
caddsv/workflow/models/seqresmodel.joblib
caddsv/workflow/models/standardmodel.joblib
caddsv/workflow/rules/annotations.smk
caddsv/workflow/rules/fileprep.smk
caddsv/workflow/rules/preprocessing.smk
caddsv/workflow/rules/seqonly.smk
caddsv/workflow/scripts/CB_final.py
caddsv/workflow/scripts/DB_features_df_generator.py
caddsv/workflow/scripts/PLIextract.py
caddsv/workflow/scripts/SB_features_df_generator.py
caddsv/workflow/scripts/add_phred.py
caddsv/workflow/scripts/annotateHIC.py
caddsv/workflow/scripts/count_map.py
caddsv/workflow/scripts/input_bed_preprocessing.sh
caddsv/workflow/scripts/input_vcf_preprocessing.sh
caddsv/workflow/scripts/log_transform.py
caddsv/workflow/scripts/max_map.py
caddsv/workflow/scripts/mean_map.py
caddsv/workflow/scripts/mean_map2.py
caddsv/workflow/scripts/preprocess_sequences.py
caddsv/workflow/scripts/retrieve_seq.py
caddsv/workflow/scripts/retrieve_seq_for_nt.py
caddsv/workflow/scripts/retrieve_seq_for_ref.py
caddsv/workflow/scripts/rule_boundary_score.py
caddsv/workflow/scripts/rule_cadd_PC_phylop.py
caddsv/workflow/scripts/rule_cadd_features.py
caddsv/workflow/scripts/rule_chromHMM.py
caddsv/workflow/scripts/rule_encode.py
caddsv/workflow/scripts/rule_screen.py
caddsv/workflow/scripts/run_segmentNT.py
caddsv/workflow/scripts/run_segmentNT_test.py
caddsv/workflow/scripts/scale_features.py
caddsv/workflow/scripts/scoring.py
caddsv/workflow/scripts/scoring_CBonly.py
caddsv/workflow/scripts/scoring_allscores.py
caddsv/workflow/scripts/scoring_seqonly.py
caddsv/workflow/scripts/sum_map.py
caddsv/workflow/scripts/test_performance.py
caddsv/workflow/scripts/training.py
caddsv/workflow/scripts/training_SBtests.py
caddsv/workflow/scripts/validation_performance.py
caddsv/workflow/scripts/zoonomia_tabix_map.py