Metadata-Version: 2.4
Name: cumulus-library-kidney-transplant
Version: 0.2.0
Summary: kidney transplant irAE (immuno related adverse events) related to immunosuppressive Medications post transplant
Requires-Python: >= 3.11
Description-Content-Type: text/markdown
License-Expression: Apache-2.0
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Requires-Dist: cumulus-library >= 5.1
Requires-Dist: pyrfc3339
Requires-Dist: sqlfluff >= 3, <4
Requires-Dist: tomli_w
Requires-Dist: black ; extra == "dev"
Requires-Dist: pylint ; extra == "dev"
Requires-Dist: pytest ; extra == "test"
Requires-Dist: pytest-cov ; extra == "test"
Project-URL: Documentation, https://docs.smarthealthit.org/cumulus/
Project-URL: Home, https://smarthealthit.org/cumulus-a-universal-sidecar-for-a-smart-learning-healthcare-system/
Project-URL: Source, https://github.com/smart-on-fhir/cumulus-library-kidney-transplant
Provides-Extra: dev
Provides-Extra: test

# VSAC ValueSets

|Study Variable|ValueSet|VSAC|
|:-------|:------|:-----|
|**dx_transplant**||
|dx_transplant|kidney|[2.16.840.1.113762.1.4.1078.16](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1078.16/expansion/Latest), [2.16.840.1.113883.3.464.1003.109.11.1063](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.464.1003.109.11.1063/expansion/Latest), [2.16.840.1.113883.3.464.1003.109.12.1012](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.464.1003.109.12.1012/expansion/Latest)|
|dx_transplant|solid_organ|[2.16.840.1.113762.1.4.1032.205](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1032.205/expansion/Latest)|
|dx_transplant|stem_cell|[2.16.840.1.113762.1.4.1032.221](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1032.221/expansion/Latest), [2.16.840.1.113762.1.4.1264.34](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1264.34/expansion/Latest)|
|dx_transplant|recipient|[2.16.840.1.113762.1.4.1111.27](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1111.27/expansion/Latest)|
|**dx_cancer**||
|dx_cancer|melanoma_malignant|[2.16.840.1.113883.3.1434.1038](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.1434.1038/expansion/Latest), [2.16.840.1.113883.3.464.1003.108.11.1018](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.464.1003.108.11.1018/expansion/Latest)|
|**dx_kidney**||
|dx_kidney|condition|[2.16.840.1.113883.17.4077.3.2028](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.17.4077.3.2028/expansion/Latest)|
|dx_kidney|renal_disease|[2.16.840.1.113762.1.4.1029.335](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1029.335/expansion/Latest)|
|dx_kidney|esrd|[2.16.840.1.113762.1.4.1235.172](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1235.172/expansion/Latest)|
|dx_kidney|ckd|[2.16.840.1.113762.1.4.1078.114](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1078.114/expansion/Latest)|
|dx_kidney|akf|[2.16.840.1.113762.1.4.1222.1534](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.1534/expansion/Latest)|
|dx_kidney|dialysis|[2.16.840.1.113762.1.4.1078.342](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1078.342/expansion/Latest)|
|dx_kidney|nephrotic_syndrome|[2.16.840.1.113883.3.464.1003.109.12.1018](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.464.1003.109.12.1018/expansion/Latest)|
|**dx_autoimmune**||
|dx_autoimmune|inflammatory|[2.16.840.1.113883.3.3157.1834](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.3157.1834/expansion/Latest)|
|dx_autoimmune|ibd|[2.16.840.1.113762.1.4.1078.879](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1078.879/expansion/Latest)|
|dx_autoimmune|crohns|[2.16.840.1.113762.1.4.1034.576](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1034.576/expansion/Latest)|
|dx_autoimmune|arthritis_ra|[2.16.840.1.113762.1.4.1222.651](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.651/expansion/Latest), [2.16.840.1.113762.1.4.1222.81](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.81/expansion/Latest)|
|dx_autoimmune|lupus|[2.16.840.1.113883.3.464.1003.117.12.1010](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.464.1003.117.12.1010/expansion/Latest)|
|**dx_immunocompromised**||
|dx_immunocompromised|any|[2.16.840.1.113883.3.666.5.1940](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.666.5.1940/expansion/Latest), [2.16.840.1.113762.1.4.1235.212](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1235.212/expansion/Latest)|
|**dx_infection**||
|dx_infection|bacterial|[2.16.840.1.113762.1.4.1200.288](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1200.288/expansion/Latest)|
|dx_infection|pna|[2.16.840.1.113762.1.4.1078.738](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1078.738/expansion/Latest)|
|dx_infection|cmv|[2.16.840.1.113762.1.4.1146.2234](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.2234/expansion/Latest), [2.16.840.1.113762.1.4.1146.2233](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.2233/expansion/Latest)|
|dx_infection|rsv|[2.16.840.1.113762.1.4.1078.754](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1078.754/expansion/Latest)|
|dx_infection|hsv|[2.16.840.1.113762.1.4.1146.1781](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.1781/expansion/Latest)|
|dx_infection|influenza|[2.16.840.1.113762.1.4.1078.747](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1078.747/expansion/Latest)|
|dx_infection|shingles|[2.16.840.1.113762.1.4.1222.1478](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.1478/expansion/Latest)|
|dx_infection|hepatitis_b|[2.16.840.1.113883.3.464.1003.110.12.1025](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.464.1003.110.12.1025/expansion/Latest)|
|dx_infection|hepatitis_c|[2.16.840.1.113762.1.4.1222.30](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.30/expansion/Latest)|
|**rx_immunosuppressive**||
|rx_immunosuppressive|drugs|[2.16.840.1.113762.1.4.1219.192](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1219.192/expansion/Latest)|
|rx_immunosuppressive|systemic_therapy|[2.16.840.1.113883.3.666.5.803](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.666.5.803/expansion/Latest)|
|rx_immunosuppressive|immune_modulators|[2.16.840.1.113762.1.4.1248.124](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1248.124/expansion/Latest)|
|rx_immunosuppressive|coricosteroids_systemic|[2.16.840.1.113883.3.3616.200.110.102.2061](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.3616.200.110.102.2061/expansion/Latest)|
|**rx_cancer**||
|rx_cancer|chemo_advanced|[2.16.840.1.113883.3.7643.2.1046](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.7643.2.1046/expansion/Latest)|
|rx_cancer|checkpoint|[2.16.840.1.113883.3.1444.5.231](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.1444.5.231/expansion/Latest)|
|rx_cancer|keytruda|[2.16.840.1.113762.1.4.1260.496](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1260.496/expansion/Latest)|
|rx_cancer|ade_neutropenia|[2.16.840.1.113883.3.526.3.1538](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.526.3.1538/expansion/Latest)|
|**rx_antibiotics**||
|rx_antibiotics|any|[2.16.840.1.113762.1.4.1078.849](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1078.849/expansion/Latest)|
|rx_antibiotics|systemic|[2.16.840.1.113762.1.4.1133.6](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1133.6/expansion/Latest)|
|**rx_diabetes**||
|rx_diabetes|drugs|[2.16.840.1.113762.1.4.1190.58](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1190.58/expansion/Latest)|
|**rx_htn**||
|rx_htn|drugs|[2.16.840.1.113883.3.600.1476](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.600.1476/expansion/Latest)|
|**rx_diuretics**||
|rx_diuretics|loop|[2.16.840.1.113762.1.4.1078.898](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1078.898/expansion/Latest)|
|rx_diuretics|potassium|[2.16.840.1.113762.1.4.1213.41](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1213.41/expansion/Latest)|
|rx_diuretics|thiazide|[2.16.840.1.113762.1.4.1078.8](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1078.8/expansion/Latest)|
|**lab_cbc**||
|lab_cbc|with_diff|[1.3.6.1.4.1.6997.4.1.2.271.13.38167.1.1.999.594](https://vsac.nlm.nih.gov/valueset/1.3.6.1.4.1.6997.4.1.2.271.13.38167.1.1.999.594/expansion/Latest)|
|**lab_cmp**||
|lab_cmp|comprehensive|[2.16.840.1.113762.1.4.1078.867](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1078.867/expansion/Latest)|
|**lab_gfr**||
|lab_gfr|egfr|[2.16.840.1.113883.3.6929.3.1000](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.6929.3.1000/expansion/Latest), [2.16.840.1.113762.1.4.1222.179](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.179/expansion/Latest), [2.16.840.1.113762.1.4.1078.397](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1078.397/expansion/Latest), [2.16.840.1.113762.1.4.1235.81](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1235.81/expansion/Latest)|
|**lab_lft**||
|lab_lft|function|[2.16.840.1.113762.1.4.1078.867](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1078.867/expansion/Latest)|
|lab_lft|ggt|[2.16.840.1.113762.1.4.1222.806](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.806/expansion/Latest)|
|lab_lft|pt|[2.16.840.1.113883.3.3616.200.110.102.5037](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.3616.200.110.102.5037/expansion/Latest)|
|lab_lft|inr|[2.16.840.1.113883.3.117.1.7.1.213](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.117.1.7.1.213/expansion/Latest)|
|**lab_creatinine**||
|lab_creatinine|serum_cr|[2.16.840.1.113762.1.4.1146.2206](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.2206/expansion/Latest)|
|lab_creatinine|blood_cr|[2.16.840.1.113762.1.4.1222.111](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.111/expansion/Latest)|
|lab_creatinine|urine_cr|[2.16.840.1.113762.1.4.1178.87](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1178.87/expansion/Latest)|
|lab_creatinine|urine_alb_cr_ratio|[2.16.840.1.113883.3.6929.3.1007](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.6929.3.1007/expansion/Latest)|
|lab_creatinine|urine_protein_cr_ratio|[2.16.840.1.113762.1.4.1222.790](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.790/expansion/Latest)|
|lab_creatinine|cystatin_c|[2.16.840.1.113762.1.4.1222.138](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.138/expansion/Latest)|
|**lab_autoimmune**||
|lab_autoimmune|serum_rf|[2.16.840.1.113762.1.4.1222.812](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.812/expansion/Latest)|
|lab_autoimmune|blood_esr|[2.16.840.1.113762.1.4.1222.1609](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.1609/expansion/Latest)|
|lab_autoimmune|crp|[2.16.840.1.113762.1.4.1146.1933](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.1933/expansion/Latest)|
|lab_autoimmune|tsh|[2.16.840.1.113762.1.4.1146.2156](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.2156/expansion/Latest)|
|lab_autoimmune|t3|[2.16.840.1.113762.1.4.1078.864](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1078.864/expansion/Latest)|
|lab_autoimmune|t4|[2.16.840.1.113762.1.4.1078.865](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1078.865/expansion/Latest)|
|**lab_diabetes**||
|lab_diabetes|screening|[2.16.840.1.113762.1.4.1221.122](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1221.122/expansion/Latest)|
|lab_diabetes|glucose_test|[2.16.840.1.113762.1.4.1045.134](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1045.134/expansion/Latest)|
|**proc_transplant**||
|proc_transplant|kidney|[2.16.840.1.113762.1.4.1078.16](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1078.16/expansion/Latest), [2.16.840.1.113883.3.464.1003.109.12.1012](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.464.1003.109.12.1012/expansion/Latest)|
|proc_transplant|other_major|[2.16.840.1.113883.3.464.1003.198.12.1075](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.464.1003.198.12.1075/expansion/Latest)|
|proc_transplant|solid_organ|[2.16.840.1.113762.1.4.1032.205](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1032.205/expansion/Latest)|
|proc_transplant|stem_cell|[2.16.840.1.113762.1.4.1032.250](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1032.250/expansion/Latest)|
|proc_transplant|recipient|[2.16.840.1.113762.1.4.1111.27](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1111.27/expansion/Latest)|
|**proc_dialysis**||
|proc_dialysis|services|[2.16.840.1.113883.3.464.1003.109.12.1013](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.464.1003.109.12.1013/expansion/Latest)|
|**proc_nephrectomy**||
|proc_nephrectomy|sct|[2.16.840.1.113762.1.4.1248.200](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1248.200/expansion/Latest)|
|proc_nephrectomy|icd10pcs|[2.16.840.1.113762.1.4.1248.4](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1248.4/expansion/Latest)|
|**doc_biopsy**||
|doc_biopsy|kidney|[2.16.840.1.113762.1.4.1222.864](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.864/expansion/Latest)|
|doc_biopsy|skin|[2.16.840.1.113762.1.4.1222.867](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.867/expansion/Latest)|
|doc_biopsy|lung|[2.16.840.1.113883.3.1434.1011](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113883.3.1434.1011/expansion/Latest)|
|doc_biopsy|bone|[2.16.840.1.113762.1.4.1222.870](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.870/expansion/Latest)|
|doc_biopsy|muscle|[2.16.840.1.113762.1.4.1222.868](https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1222.868/expansion/Latest)|
