Metadata-Version: 2.4
Name: praisonai-bio
Version: 0.2.0
Summary: Open-source AI agents for systems biology — BioModels.org discovery, simulation, and comparison
Author-email: PraisonAI <hello@praison.ai>
License: MIT
Project-URL: Homepage, https://bio.praison.ai
Project-URL: Documentation, https://bio.praison.ai
Project-URL: Repository, https://github.com/MervinPraison/PraisonAIBio
Project-URL: Changelog, https://github.com/MervinPraison/PraisonAIBio/blob/main/CHANGELOG.md
Keywords: praisonai,biomodels,sbml,systems-biology,agents
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.10
Description-Content-Type: text/markdown
Requires-Dist: praisonaiagents>=1.6.0
Requires-Dist: httpx>=0.27.0
Requires-Dist: pandas>=2.0
Provides-Extra: simulation
Requires-Dist: copasi-basico>=0.78; extra == "simulation"
Provides-Extra: plot
Requires-Dist: matplotlib>=3.7; extra == "plot"
Provides-Extra: rag
Requires-Dist: pypdf>=4.0; extra == "rag"
Provides-Extra: all
Requires-Dist: praisonai-bio[plot,rag,simulation]; extra == "all"
Provides-Extra: dev
Requires-Dist: pytest>=8.0; extra == "dev"
Requires-Dist: pytest-mock>=3.10; extra == "dev"
Requires-Dist: pyyaml>=6.0; extra == "dev"
Provides-Extra: docs
Requires-Dist: mkdocs>=1.6.0; extra == "docs"
Requires-Dist: mkdocs-material>=9.5.0; extra == "docs"
Requires-Dist: pymdown-extensions>=10.7; extra == "docs"

# praisonai-bio

PraisonAI domain plugin for BioModels.org systems biology.

## Install

```bash
pip install praisonai-bio
# or from source
pip install -e ".[simulation,plot,rag,dev]"
```

## Quick start

```python
import praisonai_bio
from praisonaiagents import Agent
from praisonai_bio.config.presets import DISCOVERY_AGENT

agent = Agent(name="scout", **DISCOVERY_AGENT)
print(agent.start("Find curated glycolysis models"))
```

## Workflows and recipes

```bash
import praisonai_bio  # required before YAML/CLI toolsets
praisonai workflow run workflows/cookbooks/full_platform_pipeline.yaml
export PRAISONAI_RECIPE_PATH=recipes/bio
praisonai recipe run biomodels-discovery --policy bio-public
```

## MCP

```bash
praisonai-bio-mcp
```

Exposes the full `sysbio-full` toolset (26 tools).

## Docs

https://bio.praison.ai
