Metadata-Version: 2.1
Name: scipion-em-roodmus
Version: 1.0.4
Summary: Roodmus plugin for Scipion
Home-page: https://github.com/scipion-em/scipion-em-roodmus
Author: David Herreros
Author-email: dherreros@cnb.csic.es
Project-URL: Bug Reports, https://github.com/scipion-em/scipion-em-roodmus/issues
Project-URL: Source, https://github.com/scipion-em/scipion-em-roodmus/
Keywords: scipion cryoem imageprocessing scipion-3.0 datasimulation
License-File: LICENSE

==========================
Roodmus plugin for Scipion
==========================

Plugin to run `Roodmus <https://github.com/ccpem/roodmus>`_ software in Scipion.

All the information regarding the software is avalaible in the following `paper <https://www.biorxiv.org/content/10.1101/2024.04.29.590932v1>`_.

Roodmus is a benchmarking tool that allows for the analysis of cryo-EM reconstruction methods using ground truth data. Roodmus uses a molecular dynamics (MD) trajectory as input and samples this trajectory to generate a data set with encoded heterogeneity as defined by the MD. Synthetic micrographs are generated in the package using the `Parakeet <https://github.com/rosalindfranklininstitute/parakeet>`_ simulation software.

==========================
Plugin installation
==========================

There are two different ways to install Roodmus plugin:

Production mode
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.. code-block::

    scipion3 installp -p scipion-em-roodmus

Development mode
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.. code-block::

    git clone https://github.com/scipion-em/scipion-em-roodmus.git
    scipion3 installp -p scipion-em-roodmus --devel
