Med3pa documentation
Installation Guide
Installation Guide
Subpackages
datasets subpackage
models subpackage
detectron subpackage
med3pa subpackage
Tutorials
Working with datasets subpackage
Working with the Models Subpackage
Working with the Detectron Subpackage
Working with the med3pa Subpackage
Med3pa documentation
Index
Index
A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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X
A
AbsoluteError (class in MED3pa.med3pa.uncertainty)
accuracy() (MED3pa.models.classification_metrics.ClassificationEvaluationMetrics static method)
APCModel (class in MED3pa.med3pa.models)
average_precision() (MED3pa.models.classification_metrics.ClassificationEvaluationMetrics static method)
B
balance_train_weights() (MED3pa.models.abstract_models.ClassificationModel method)
balanced_accuracy() (MED3pa.models.classification_metrics.ClassificationEvaluationMetrics static method)
BaseModelManager (class in MED3pa.models.base)
build_tree() (MED3pa.med3pa.tree.TreeRepresentation method)
C
calc_metrics_by_dr() (MED3pa.med3pa.mdr.MDRCalculator static method)
calc_metrics_by_profiles() (MED3pa.med3pa.mdr.MDRCalculator static method)
calc_profiles() (MED3pa.med3pa.mdr.MDRCalculator static method)
calculate() (MED3pa.med3pa.uncertainty.AbsoluteError method)
(MED3pa.med3pa.uncertainty.UncertaintyMetric method)
calculate_uncertainty() (MED3pa.med3pa.uncertainty.UncertaintyCalculator method)
check_version() (MED3pa.models.factories.XGBoostFactory method)
ClassificationEvaluationMetrics (class in MED3pa.models.classification_metrics)
ClassificationModel (class in MED3pa.models.abstract_models)
clone() (MED3pa.datasets.masked.MaskedDataset method)
clone_base_model() (MED3pa.models.base.BaseModelManager class method)
count_quantile() (MED3pa.detectron.record.DetectronRecordsManager method)
counts() (MED3pa.detectron.record.DetectronRecordsManager method)
create_model_from_pickled() (MED3pa.models.factories.ModelFactory static method)
(MED3pa.models.factories.XGBoostFactory method)
create_model_with_hyperparams() (MED3pa.models.factories.ModelFactory static method)
(MED3pa.models.factories.XGBoostFactory method)
CSVDataLoadingStrategy (class in MED3pa.datasets.loading_strategies)
D
data_preparation_strategy (MED3pa.models.abstract_models.Model attribute)
DataLoadingContext (class in MED3pa.datasets.loading_context)
DataLoadingStrategy (class in MED3pa.datasets.loading_strategies)
DataPreparingStrategy (class in MED3pa.models.data_strategies)
DatasetsManager (class in MED3pa.datasets.manager)
DecisionTreeRegressorModel (class in MED3pa.models.concrete_regressors)
default_params (MED3pa.med3pa.models.APCModel attribute)
(MED3pa.med3pa.models.IPCModel attribute)
detectron_by_profiles() (MED3pa.med3pa.mdr.MDRCalculator static method)
DetectronEnsemble (class in MED3pa.detectron.ensemble)
DetectronRecord (class in MED3pa.detectron.record)
DetectronRecordsManager (class in MED3pa.detectron.record)
E
EarlyStopper (class in MED3pa.detectron.stopper)
evaluate() (MED3pa.med3pa.models.APCModel method)
(MED3pa.med3pa.models.IPCModel method)
(MED3pa.models.abstract_models.Model method)
(MED3pa.models.concrete_classifiers.XGBoostModel method)
(MED3pa.models.concrete_regressors.DecisionTreeRegressorModel method)
(MED3pa.models.concrete_regressors.RandomForestRegressorModel method)
evaluate_ensemble() (MED3pa.detectron.ensemble.DetectronEnsemble method)
EvaluationMetric (class in MED3pa.models.abstract_metrics)
execute() (MED3pa.datasets.loading_strategies.CSVDataLoadingStrategy static method)
(MED3pa.datasets.loading_strategies.DataLoadingStrategy method)
(MED3pa.models.data_strategies.DataPreparingStrategy static method)
(MED3pa.models.data_strategies.ToDataframesStrategy static method)
(MED3pa.models.data_strategies.ToDmatrixStrategy static method)
(MED3pa.models.data_strategies.ToNumpyStrategy static method)
extract_params() (MED3pa.models.factories.XGBoostFactory method)
F
f1_score() (MED3pa.models.classification_metrics.ClassificationEvaluationMetrics static method)
factories (MED3pa.models.factories.ModelFactory attribute)
freeze() (MED3pa.detectron.record.DetectronRecordsManager method)
G
get_all_profiles() (MED3pa.med3pa.tree.TreeRepresentation method)
get_column_labels() (MED3pa.datasets.manager.DatasetsManager method)
get_confidence_scores() (MED3pa.datasets.masked.MaskedDataset method)
get_data_strategy() (MED3pa.models.abstract_models.Model method)
get_dataset_by_type() (MED3pa.datasets.manager.DatasetsManager method)
get_factory() (MED3pa.models.factories.ModelFactory static method)
get_info() (MED3pa.datasets.manager.DatasetsManager method)
(MED3pa.datasets.masked.MaskedDataset method)
(MED3pa.models.abstract_models.Model method)
get_instance() (MED3pa.models.base.BaseModelManager class method)
get_lost_profiles() (MED3pa.med3pa.profiles.ProfilesManager method)
get_metric() (MED3pa.models.abstract_metrics.EvaluationMetric class method)
(MED3pa.models.classification_metrics.ClassificationEvaluationMetrics class method)
(MED3pa.models.regression_metrics.RegressionEvaluationMetrics class method)
get_model() (MED3pa.models.abstract_models.Model method)
get_model_type() (MED3pa.models.abstract_models.Model method)
get_observations() (MED3pa.datasets.masked.MaskedDataset method)
get_params() (MED3pa.models.abstract_models.Model method)
get_profiles() (MED3pa.med3pa.profiles.ProfilesManager method)
get_profiles_manager() (MED3pa.med3pa.experiment.Med3paResults method)
get_pseudo_labels() (MED3pa.datasets.masked.MaskedDataset method)
get_pseudo_probabilities() (MED3pa.datasets.masked.MaskedDataset method)
get_record() (MED3pa.detectron.record.DetectronRecordsManager method)
get_sample_counts() (MED3pa.datasets.masked.MaskedDataset method)
get_strategy() (MED3pa.datasets.loading_context.DataLoadingContext method)
get_supported_models() (MED3pa.models.factories.ModelFactory static method)
get_true_labels() (MED3pa.datasets.masked.MaskedDataset method)
I
insert_lost_profiles() (MED3pa.med3pa.profiles.ProfilesManager method)
insert_profiles() (MED3pa.med3pa.profiles.ProfilesManager method)
IPCModel (class in MED3pa.med3pa.models)
is_pickled() (MED3pa.models.abstract_models.Model method)
is_supported_data() (MED3pa.models.data_strategies.ToDmatrixStrategy static method)
L
load() (MED3pa.detectron.record.DetectronRecordsManager static method)
load_as_np() (MED3pa.datasets.loading_context.DataLoadingContext method)
log_loss() (MED3pa.models.classification_metrics.ClassificationEvaluationMetrics static method)
M
MaskedDataset (class in MED3pa.datasets.masked)
matthews_corrcoef() (MED3pa.models.classification_metrics.ClassificationEvaluationMetrics static method)
MDRCalculator (class in MED3pa.med3pa.mdr)
mean_absolute_error() (MED3pa.models.regression_metrics.RegressionEvaluationMetrics static method)
mean_squared_error() (MED3pa.models.regression_metrics.RegressionEvaluationMetrics static method)
MED3pa.datasets.loading_context
module
MED3pa.datasets.loading_strategies
module
MED3pa.datasets.manager
module
MED3pa.datasets.masked
module
MED3pa.detectron.ensemble
module
MED3pa.detectron.record
module
MED3pa.detectron.stopper
module
MED3pa.med3pa.experiment
module
MED3pa.med3pa.mdr
module
MED3pa.med3pa.models
module
MED3pa.med3pa.profiles
module
MED3pa.med3pa.tree
module
MED3pa.med3pa.uncertainty
module
MED3pa.models.abstract_metrics
module
MED3pa.models.abstract_models
module
MED3pa.models.base
module
MED3pa.models.classification_metrics
module
MED3pa.models.concrete_classifiers
module
MED3pa.models.concrete_regressors
module
MED3pa.models.data_strategies
module
MED3pa.models.factories
module
MED3pa.models.regression_metrics
module
Med3paDetectronExperiment (class in MED3pa.med3pa.experiment)
Med3paExperiment (class in MED3pa.med3pa.experiment)
Med3paResults (class in MED3pa.med3pa.experiment)
Model (class in MED3pa.models.abstract_models)
model (MED3pa.models.abstract_models.Model attribute)
model_class (MED3pa.models.abstract_models.Model attribute)
model_mapping (MED3pa.models.factories.ModelFactory attribute)
ModelFactory (class in MED3pa.models.factories)
module
MED3pa.datasets.loading_context
MED3pa.datasets.loading_strategies
MED3pa.datasets.manager
MED3pa.datasets.masked
MED3pa.detectron.ensemble
MED3pa.detectron.record
MED3pa.detectron.stopper
MED3pa.med3pa.experiment
MED3pa.med3pa.mdr
MED3pa.med3pa.models
MED3pa.med3pa.profiles
MED3pa.med3pa.tree
MED3pa.med3pa.uncertainty
MED3pa.models.abstract_metrics
MED3pa.models.abstract_models
MED3pa.models.base
MED3pa.models.classification_metrics
MED3pa.models.concrete_classifiers
MED3pa.models.concrete_regressors
MED3pa.models.data_strategies
MED3pa.models.factories
MED3pa.models.regression_metrics
MPCModel (class in MED3pa.med3pa.models)
N
npv() (MED3pa.models.classification_metrics.ClassificationEvaluationMetrics static method)
O
optimize() (MED3pa.med3pa.models.APCModel method)
(MED3pa.med3pa.models.IPCModel method)
P
params (MED3pa.models.abstract_models.Model attribute)
pickled_model (MED3pa.models.abstract_models.Model attribute)
ppv() (MED3pa.models.classification_metrics.ClassificationEvaluationMetrics static method)
precision() (MED3pa.models.classification_metrics.ClassificationEvaluationMetrics static method)
predict() (MED3pa.med3pa.models.APCModel method)
(MED3pa.med3pa.models.IPCModel method)
(MED3pa.med3pa.models.MPCModel method)
(MED3pa.models.abstract_models.ClassificationModel method)
(MED3pa.models.abstract_models.RegressionModel method)
(MED3pa.models.concrete_classifiers.XGBoostModel method)
(MED3pa.models.concrete_regressors.DecisionTreeRegressorModel method)
(MED3pa.models.concrete_regressors.RandomForestRegressorModel method)
predicted_probabilities() (MED3pa.detectron.record.DetectronRecordsManager method)
print_evaluation_results() (MED3pa.models.abstract_models.Model method)
Profile (class in MED3pa.med3pa.profiles)
ProfilesManager (class in MED3pa.med3pa.profiles)
R
r2_score() (MED3pa.models.regression_metrics.RegressionEvaluationMetrics static method)
RandomForestRegressorModel (class in MED3pa.models.concrete_regressors)
recall() (MED3pa.models.classification_metrics.ClassificationEvaluationMetrics static method)
refine() (MED3pa.datasets.masked.MaskedDataset method)
RegressionEvaluationMetrics (class in MED3pa.models.regression_metrics)
RegressionModel (class in MED3pa.models.abstract_models)
rejected_count_quantile() (MED3pa.detectron.record.DetectronRecordsManager method)
rejected_counts() (MED3pa.detectron.record.DetectronRecordsManager method)
rejection_rates() (MED3pa.detectron.record.DetectronRecordsManager method)
reset_datasets() (MED3pa.datasets.manager.DatasetsManager method)
reset_indices() (MED3pa.datasets.masked.MaskedDataset method)
roc_auc() (MED3pa.models.classification_metrics.ClassificationEvaluationMetrics static method)
root_mean_squared_error() (MED3pa.models.regression_metrics.RegressionEvaluationMetrics static method)
run() (MED3pa.med3pa.experiment.Med3paDetectronExperiment static method)
(MED3pa.med3pa.experiment.Med3paExperiment static method)
S
sample_random() (MED3pa.datasets.masked.MaskedDataset method)
sample_uniform() (MED3pa.datasets.masked.MaskedDataset method)
save() (MED3pa.detectron.record.DetectronRecordsManager method)
(MED3pa.med3pa.experiment.Med3paResults method)
(MED3pa.models.abstract_models.Model method)
save_dataset_to_csv() (MED3pa.datasets.manager.DatasetsManager method)
save_to_csv() (MED3pa.datasets.masked.MaskedDataset method)
seed() (MED3pa.detectron.record.DetectronRecordsManager method)
sensitivity() (MED3pa.models.classification_metrics.ClassificationEvaluationMetrics static method)
set_base_model() (MED3pa.models.base.BaseModelManager class method)
set_column_labels() (MED3pa.datasets.manager.DatasetsManager method)
set_confidence_scores() (MED3pa.datasets.masked.MaskedDataset method)
set_data_strategy() (MED3pa.models.abstract_models.Model method)
set_dataset() (MED3pa.med3pa.experiment.Med3paResults method)
set_from_data() (MED3pa.datasets.manager.DatasetsManager method)
set_from_file() (MED3pa.datasets.manager.DatasetsManager method)
set_metrics_by_dr() (MED3pa.med3pa.experiment.Med3paResults method)
set_model() (MED3pa.models.abstract_models.Model method)
set_models_evaluation() (MED3pa.med3pa.experiment.Med3paResults method)
set_params() (MED3pa.models.abstract_models.Model method)
set_profiles_manager() (MED3pa.med3pa.experiment.Med3paResults method)
set_pseudo_labels() (MED3pa.datasets.masked.MaskedDataset method)
set_pseudo_probs_labels() (MED3pa.datasets.masked.MaskedDataset method)
set_strategy() (MED3pa.datasets.loading_context.DataLoadingContext method)
specificity() (MED3pa.models.classification_metrics.ClassificationEvaluationMetrics static method)
strategies (MED3pa.datasets.loading_context.DataLoadingContext attribute)
summarize() (MED3pa.datasets.manager.DatasetsManager method)
(MED3pa.datasets.masked.MaskedDataset method)
supported_file_formats() (in module MED3pa.datasets.loading_context)
supported_ipc_models() (MED3pa.med3pa.models.IPCModel class method)
supported_metrics() (MED3pa.models.abstract_metrics.EvaluationMetric class method)
(MED3pa.models.classification_metrics.ClassificationEvaluationMetrics class method)
(MED3pa.models.regression_metrics.RegressionEvaluationMetrics class method)
supported_models_params() (MED3pa.med3pa.models.APCModel class method)
(MED3pa.med3pa.models.IPCModel class method)
supported_params (MED3pa.med3pa.models.APCModel attribute)
supported_regressors_mapping (MED3pa.med3pa.models.IPCModel attribute)
supported_regressos_params (MED3pa.med3pa.models.IPCModel attribute)
T
to_dataframe() (MED3pa.datasets.masked.MaskedDataset method)
to_dict() (MED3pa.detectron.record.DetectronRecord method)
(MED3pa.med3pa.profiles.Profile method)
to_serializable() (in module MED3pa.med3pa.experiment)
ToDataframesStrategy (class in MED3pa.models.data_strategies)
ToDmatrixStrategy (class in MED3pa.models.data_strategies)
ToNumpyStrategy (class in MED3pa.models.data_strategies)
train() (MED3pa.med3pa.models.APCModel method)
(MED3pa.med3pa.models.IPCModel method)
(MED3pa.models.abstract_models.ClassificationModel method)
(MED3pa.models.abstract_models.RegressionModel method)
(MED3pa.models.concrete_classifiers.XGBoostModel method)
(MED3pa.models.concrete_regressors.DecisionTreeRegressorModel method)
(MED3pa.models.concrete_regressors.RandomForestRegressorModel method)
train_to_disagree() (MED3pa.models.concrete_classifiers.XGBoostModel method)
transform_to_profiles() (MED3pa.med3pa.profiles.ProfilesManager static method)
TreeRepresentation (class in MED3pa.med3pa.tree)
U
UncertaintyCalculator (class in MED3pa.med3pa.uncertainty)
UncertaintyMetric (class in MED3pa.med3pa.uncertainty)
update() (MED3pa.detectron.record.DetectronRecord method)
(MED3pa.detectron.record.DetectronRecordsManager method)
(MED3pa.detectron.stopper.EarlyStopper method)
update_detectron_results() (MED3pa.med3pa.profiles.Profile method)
update_metrics_results() (MED3pa.med3pa.profiles.Profile method)
update_node_information() (MED3pa.med3pa.profiles.Profile method)
update_params() (MED3pa.models.abstract_models.Model method)
V
validate_params() (MED3pa.models.abstract_models.Model method)
X
XGBoostFactory (class in MED3pa.models.factories)
XGBoostModel (class in MED3pa.models.concrete_classifiers)