LICENSE
MANIFEST.in
README.md
requirements.json
setup.py
example/__init__.py
example/mol_align.py
example/rcsb_prepare.py
lazydock/__init__.py
lazydock/__version__.py
lazydock/config.py
lazydock/utils.py
lazydock.egg-info/PKG-INFO
lazydock.egg-info/SOURCES.txt
lazydock.egg-info/dependency_links.txt
lazydock.egg-info/entry_points.txt
lazydock.egg-info/requires.txt
lazydock.egg-info/top_level.txt
lazydock/algorithm/__init__.py
lazydock/algorithm/gamd_reweight.py
lazydock/algorithm/prs.py
lazydock/algorithm/rms.py
lazydock/algorithm/utils.py
lazydock/gmx/__init__.py
lazydock/gmx/box.py
lazydock/gmx/prepare_ff.py
lazydock/gmx/qmmm_charge.py
lazydock/gmx/run.py
lazydock/gmx/abfe/__init__.py
lazydock/gmx/abfe/_home.py
lazydock/gmx/abfe/boresch.py
lazydock/gmx/abfe/engine.py
lazydock/gmx/abfe/fep_analysis.py
lazydock/gmx/abfe/gather_results.py
lazydock/gmx/abfe/mdp.py
lazydock/gmx/abfe/solvent.py
lazydock/gmx/abfe/status.py
lazydock/gmx/abfe/system_builder.py
lazydock/gmx/abfe/templates.py
lazydock/gmx/abfe/tools.py
lazydock/gmx/abfe/data/gmx_ff/Slipids_2020.ff.tar.gz
lazydock/gmx/abfe/data/gmx_ff/amber99sb-star-ildn.ff.tar.gz
lazydock/gmx/abfe/data/gmx_water_models/README.md
lazydock/gmx/abfe/data/gmx_water_models/water_models.yml
lazydock/gmx/abfe/data/gmx_water_models/amber/ffnonbonded.itp
lazydock/gmx/abfe/data/gmx_water_models/amber/ions.itp
lazydock/gmx/abfe/data/gmx_water_models/amber/spc.itp
lazydock/gmx/abfe/data/gmx_water_models/amber/spce.itp
lazydock/gmx/abfe/data/gmx_water_models/amber/tip3p.itp
lazydock/gmx/abfe/data/gmx_water_models/amber/tip4p.itp
lazydock/gmx/abfe/data/gmx_water_models/amber/tip4pew.itp
lazydock/gmx/abfe/data/gmx_water_models/amber/tip5p.itp
lazydock/gmx/abfe/data/gmx_water_models/amber/watermodels.dat
lazydock/gmx/abfe/data/gmx_water_models/charmm/ffnonbonded.itp
lazydock/gmx/abfe/data/gmx_water_models/charmm/ions.itp
lazydock/gmx/abfe/data/gmx_water_models/charmm/spc.itp
lazydock/gmx/abfe/data/gmx_water_models/charmm/spce.itp
lazydock/gmx/abfe/data/gmx_water_models/charmm/tip3p.itp
lazydock/gmx/abfe/data/gmx_water_models/charmm/tip4p.itp
lazydock/gmx/abfe/data/gmx_water_models/charmm/tip5p.itp
lazydock/gmx/abfe/data/gmx_water_models/charmm/tips3p.itp
lazydock/gmx/abfe/data/gmx_water_models/charmm/watermodels.dat
lazydock/gmx/abfe/data/gmx_water_models/configurations/spc216.gro
lazydock/gmx/abfe/data/gmx_water_models/configurations/tip4p.gro
lazydock/gmx/abfe/data/gmx_water_models/configurations/tip5p.gro
lazydock/gmx/abfe/data/gmx_water_models/oplsaa/ffnonbonded.itp
lazydock/gmx/abfe/data/gmx_water_models/oplsaa/ions.itp
lazydock/gmx/abfe/data/gmx_water_models/oplsaa/spc.itp
lazydock/gmx/abfe/data/gmx_water_models/oplsaa/spce.itp
lazydock/gmx/abfe/data/gmx_water_models/oplsaa/tip3p.itp
lazydock/gmx/abfe/data/gmx_water_models/oplsaa/tip4p.itp
lazydock/gmx/abfe/data/gmx_water_models/oplsaa/tip4pew.itp
lazydock/gmx/abfe/data/gmx_water_models/oplsaa/tip5p.itp
lazydock/gmx/abfe/data/gmx_water_models/oplsaa/tip5pe.itp
lazydock/gmx/abfe/data/gmx_water_models/oplsaa/watermodels.dat
lazydock/gmx/abfe/mdp_templates/__init__.py
lazydock/gmx/abfe/mdp_templates/complex/membrane/equi/00_min.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/equi/01_nvt.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/equi/02_nvt.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/equi/03_npt.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/equi/04_npt.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/equi/05_npt.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/equi/06_npt.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/equi/prod.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/fep/bonded/00_min.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/fep/bonded/01_nvt.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/fep/bonded/02_npt.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/fep/bonded/03_npt_norest.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/fep/bonded/prod.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/fep/coul/00_min.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/fep/coul/01_nvt.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/fep/coul/02_npt.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/fep/coul/03_npt_norest.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/fep/coul/prod.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/fep/vdw/00_min.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/fep/vdw/01_nvt.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/fep/vdw/02_npt.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/fep/vdw/03_npt_norest.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/fep/vdw/prod.mdp
lazydock/gmx/abfe/mdp_templates/complex/membrane/mmpbsa/prod.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/equi/00_min.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/equi/01_nvt.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/equi/02_nvt.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/equi/03_npt.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/equi/04_npt.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/equi/prod.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/fep/bonded/00_min.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/fep/bonded/01_nvt.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/fep/bonded/02_npt.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/fep/bonded/03_npt_norest.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/fep/bonded/prod.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/fep/coul/00_min.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/fep/coul/01_nvt.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/fep/coul/02_npt.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/fep/coul/03_npt_norest.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/fep/coul/prod.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/fep/vdw/00_min.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/fep/vdw/01_nvt.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/fep/vdw/02_npt.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/fep/vdw/03_npt_norest.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/fep/vdw/prod.mdp
lazydock/gmx/abfe/mdp_templates/complex/soluble/mmpbsa/prod.mdp
lazydock/gmx/abfe/mdp_templates/ligand/equi/00_min.mdp
lazydock/gmx/abfe/mdp_templates/ligand/equi/01_nvt.mdp
lazydock/gmx/abfe/mdp_templates/ligand/equi/02_nvt.mdp
lazydock/gmx/abfe/mdp_templates/ligand/equi/03_npt.mdp
lazydock/gmx/abfe/mdp_templates/ligand/equi/prod.mdp
lazydock/gmx/abfe/mdp_templates/ligand/fep/coul/00_min.mdp
lazydock/gmx/abfe/mdp_templates/ligand/fep/coul/01_nvt.mdp
lazydock/gmx/abfe/mdp_templates/ligand/fep/coul/02_npt.mdp
lazydock/gmx/abfe/mdp_templates/ligand/fep/coul/03_npt_norest.mdp
lazydock/gmx/abfe/mdp_templates/ligand/fep/coul/prod.mdp
lazydock/gmx/abfe/mdp_templates/ligand/fep/vdw/00_min.mdp
lazydock/gmx/abfe/mdp_templates/ligand/fep/vdw/01_nvt.mdp
lazydock/gmx/abfe/mdp_templates/ligand/fep/vdw/02_npt.mdp
lazydock/gmx/abfe/mdp_templates/ligand/fep/vdw/03_npt_norest.mdp
lazydock/gmx/abfe/mdp_templates/ligand/fep/vdw/prod.mdp
lazydock/gmx/mda/__init__.py
lazydock/gmx/mda/align.py
lazydock/gmx/mda/convert.py
lazydock/gmx/mda/dihedrals.py
lazydock/gmx/mda/gnm.py
lazydock/gmx/mda/utils.py
lazydock/gmx/thirdparty/__init__.py
lazydock/gmx/thirdparty/cgenff_charmm2gmx.py
lazydock/gmx/thirdparty/sort_mol2_bonds.py
lazydock/nn/__init__.py
lazydock/nn/EHIGN/__init__.py
lazydock/nn/EHIGN/api.py
lazydock/nn/EHIGN/data.py
lazydock/nn/EHIGN/model.py
lazydock/nn/EHIGN/utils.py
lazydock/opmm/__init__.py
lazydock/opmm/fix_ncAA.py
lazydock/opmm/relax.py
lazydock/pml/__init__.py
lazydock/pml/adfr.py
lazydock/pml/align_to_axis.py
lazydock/pml/autodock_utils.py
lazydock/pml/interaction_utils.py
lazydock/pml/ligplus_interaction.py
lazydock/pml/plip_interaction.py
lazydock/pml/rrcs.py
lazydock/pml/server.py
lazydock/pml/shader.py
lazydock/pml/utils.py
lazydock/pml/thirdparty/__init__.py
lazydock/pml/thirdparty/draw_bounding_box.py
lazydock/pml/thirdparty/modevectors.py
lazydock/pml_plugin/__init__.py
lazydock/pml_plugin/_init_.py
lazydock/pml_plugin/lazy_dlg.py
lazydock/pml_plugin/lazy_plot.py
lazydock/pml_plugin/lazy_pml.py
lazydock/pml_plugin/lazy_pocket.py
lazydock/pml_plugin/main.py
lazydock/pml_plugin/_nicegui/__init__.py
lazydock/pml_plugin/_nicegui/local_file_picker.py
lazydock/pyrt/__init__.py
lazydock/pyrt/energy_utils.py
lazydock/pyrt/pose_utils.py
lazydock/pyrt/relax.py
lazydock/pyrt/select_utils.py
lazydock/scripts/__init__.py
lazydock/scripts/__main__.py
lazydock/scripts/_main_.py
lazydock/scripts/_script_utils_.py
lazydock/scripts/affinity.py
lazydock/scripts/align_pose_to_axis.py
lazydock/scripts/ana_amber.py
lazydock/scripts/ana_gmx.py
lazydock/scripts/ana_interaction.py
lazydock/scripts/check_structure.py
lazydock/scripts/distribute_file.py
lazydock/scripts/dock.py
lazydock/scripts/eval_modeling.py
lazydock/scripts/get_pocket.py
lazydock/scripts/md_ana.py
lazydock/scripts/md_ana_cuda.py
lazydock/scripts/md_task.py
lazydock/scripts/md_traj.py
lazydock/scripts/opmm.py
lazydock/scripts/prepare_abfe.py
lazydock/scripts/prepare_amber.py
lazydock/scripts/prepare_gmx.py
lazydock/scripts/prepare_gmx_umbrella.py
lazydock/scripts/prepare_lig.py
lazydock/scripts/rosetta.py
lazydock/scripts/run_abfe.py
lazydock/scripts/run_amber.py
lazydock/scripts/run_gmx.py
lazydock/scripts/run_gmx_umbrella.py
lazydock/scripts/sort_mol2_bonds.py
lazydock/storage/lazydock-cli-scripts-list.json
lazydock/storage/gmx/residuetypes.dat
lazydock/storage/opmm/charmm36_caps.xml
lazydock/storage/opmm/charmm36_d_aa.xml
lazydock/storage/opmm/charmm36_nc_aa.xml
lazydock/storage/opmm/ions.xml
lazydock/web/__init__.py
lazydock/web/cgenff.py
lazydock/web/dinc.py
lazydock/web/gen_pocket.py
lazydock/web/gpcrdb.py
lazydock/web/hdock.py
lazydock/web/lig_eval.py
lazydock/web/model_eval.py
lazydock_pymol_plugin/__init__.py
test/test_run_amber.py