LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements-dev.txt
requirements-devmodels.txt
requirements.txt
./openretina/__init__.py
./openretina/py.typed
./openretina/cli/__init__.py
./openretina/cli/__main__.py
./openretina/cli/create_data.py
./openretina/cli/openretina_main.py
./openretina/cli/train.py
./openretina/cli/visualize_model_neurons.py
./openretina/data_io/__init__.py
./openretina/data_io/artificial_stimuli.py
./openretina/data_io/base.py
./openretina/data_io/base_dataloader.py
./openretina/data_io/cyclers.py
./openretina/data_io/h5_dataset_reader.py
./openretina/data_io/hoefling_2024/__init__.py
./openretina/data_io/hoefling_2024/constants.py
./openretina/data_io/hoefling_2024/dataloaders.py
./openretina/data_io/hoefling_2024/responses.py
./openretina/data_io/hoefling_2024/stimuli.py
./openretina/data_io/karamanlis_2024/__init__.py
./openretina/data_io/karamanlis_2024/responses.py
./openretina/data_io/karamanlis_2024/stimuli.py
./openretina/data_io/maheswaranathan_2023/__init__.py
./openretina/data_io/maheswaranathan_2023/constants.py
./openretina/data_io/maheswaranathan_2023/responses.py
./openretina/data_io/maheswaranathan_2023/stimuli.py
./openretina/eval/metrics.py
./openretina/eval/oracles.py
./openretina/insilico/__init__.py
./openretina/insilico/stimulus_optimization/__init__.py
./openretina/insilico/stimulus_optimization/objective.py
./openretina/insilico/stimulus_optimization/optimization_stopper.py
./openretina/insilico/stimulus_optimization/optimizer.py
./openretina/insilico/stimulus_optimization/regularizer.py
./openretina/insilico/tuning_analyses/response_gradient.py
./openretina/legacy/__init__.py
./openretina/legacy/dev_models.py
./openretina/legacy/models.py
./openretina/models/__init__.py
./openretina/models/core_readout.py
./openretina/models/dev.py
./openretina/models/linear_nonlinear.py
./openretina/models/sparse_autoencoder.py
./openretina/modules/__init__.py
./openretina/modules/measures.py
./openretina/modules/core/__init__.py
./openretina/modules/core/base_core.py
./openretina/modules/core/gru_core.py
./openretina/modules/layers/__init__.py
./openretina/modules/layers/convolutions.py
./openretina/modules/layers/ensemble.py
./openretina/modules/layers/gru.py
./openretina/modules/layers/regularizers.py
./openretina/modules/layers/scaling.py
./openretina/modules/losses/__init__.py
./openretina/modules/losses/correlation.py
./openretina/modules/losses/mse.py
./openretina/modules/losses/poisson.py
./openretina/modules/readout/__init__.py
./openretina/modules/readout/base.py
./openretina/modules/readout/factorised_gaussian.py
./openretina/modules/readout/multi_readout.py
./openretina/utils/__init__.py
./openretina/utils/capture_output.py
./openretina/utils/constants.py
./openretina/utils/file_utils.py
./openretina/utils/h5_handling.py
./openretina/utils/misc.py
./openretina/utils/model_utils.py
./openretina/utils/nnfabrik_model_loading.py
./openretina/utils/plotting.py
./openretina/utils/video_analysis.py
./tests/data_io/test_cyclers.py
./tests/insilico/stimulus_optimization/test_optimization_stopper.py
./tests/insilico/stimulus_optimization/test_optimizer.py
./tests/models/test_autoencoder.py
./tests/models/test_core_readout.py
./tests/paper_openretina_2025/listing_load_and_forward_pass.py
./tests/paper_openretina_2025/listing_mei.py
./tests/paper_openretina_2025/listing_plot_weights.py
./tests/paper_openretina_2025/test_all_listings.py
./tests/utils/test_file_utils.py
./tests/utils/test_nn_fabrik_model_loading.py
./tests/utils/test_plotting.py
configs/hdf5_core_readout.yaml
configs/hoefling_2024_core_readout_high_res.yaml
configs/hoefling_2024_core_readout_low_res.yaml
configs/karamanlis_2024_core_readout.yaml
configs/maheswaranathan_2023_LNP.yaml
configs/maheswaranathan_2023_core_readout.yaml
configs/template_outer_config.yaml
configs/data_io/hdf5_reader.yaml
configs/data_io/hoefling_2024.yaml
configs/data_io/karamanlis_2024.yaml
configs/data_io/maheswaranathan_2023.yaml
configs/dataloader/hdf5_loader.yaml
configs/dataloader/hoefling_2024.yaml
configs/dataloader/karamanlis_2024.yaml
configs/dataloader/maheswaranathan_2023.yaml
configs/hydra/default.yaml
configs/logger/csv.yaml
configs/logger/tensorboard.yaml
configs/logger/wandb.yaml
configs/model/GRU_core_readout.yaml
configs/model/base_core_readout.yaml
configs/model/linear_nonlinear_poisson.yaml
configs/quality_checks/hoefling_2024.yaml
configs/trainer/debug.yaml
configs/trainer/default_deterministic.yaml
configs/training_callbacks/early_stopping.yaml
configs/training_callbacks/lr_monitor.yaml
configs/training_callbacks/model_checkpoint.yaml
configs/training_callbacks/optimizer_reset.yaml
openretina/__init__.py
openretina/py.typed
openretina.egg-info/PKG-INFO
openretina.egg-info/SOURCES.txt
openretina.egg-info/dependency_links.txt
openretina.egg-info/entry_points.txt
openretina.egg-info/requires.txt
openretina.egg-info/top_level.txt
openretina/cli/__init__.py
openretina/cli/__main__.py
openretina/cli/create_data.py
openretina/cli/openretina_main.py
openretina/cli/train.py
openretina/cli/visualize_model_neurons.py
openretina/data_io/__init__.py
openretina/data_io/artificial_stimuli.py
openretina/data_io/base.py
openretina/data_io/base_dataloader.py
openretina/data_io/cyclers.py
openretina/data_io/h5_dataset_reader.py
openretina/data_io/hoefling_2024/__init__.py
openretina/data_io/hoefling_2024/constants.py
openretina/data_io/hoefling_2024/dataloaders.py
openretina/data_io/hoefling_2024/responses.py
openretina/data_io/hoefling_2024/stimuli.py
openretina/data_io/karamanlis_2024/__init__.py
openretina/data_io/karamanlis_2024/responses.py
openretina/data_io/karamanlis_2024/stimuli.py
openretina/data_io/maheswaranathan_2023/__init__.py
openretina/data_io/maheswaranathan_2023/constants.py
openretina/data_io/maheswaranathan_2023/responses.py
openretina/data_io/maheswaranathan_2023/stimuli.py
openretina/eval/metrics.py
openretina/eval/oracles.py
openretina/insilico/__init__.py
openretina/insilico/stimulus_optimization/__init__.py
openretina/insilico/stimulus_optimization/objective.py
openretina/insilico/stimulus_optimization/optimization_stopper.py
openretina/insilico/stimulus_optimization/optimizer.py
openretina/insilico/stimulus_optimization/regularizer.py
openretina/insilico/tuning_analyses/response_gradient.py
openretina/legacy/__init__.py
openretina/legacy/dev_models.py
openretina/legacy/models.py
openretina/models/__init__.py
openretina/models/core_readout.py
openretina/models/dev.py
openretina/models/linear_nonlinear.py
openretina/models/sparse_autoencoder.py
openretina/modules/__init__.py
openretina/modules/measures.py
openretina/modules/core/__init__.py
openretina/modules/core/base_core.py
openretina/modules/core/gru_core.py
openretina/modules/layers/__init__.py
openretina/modules/layers/convolutions.py
openretina/modules/layers/ensemble.py
openretina/modules/layers/gru.py
openretina/modules/layers/regularizers.py
openretina/modules/layers/scaling.py
openretina/modules/losses/__init__.py
openretina/modules/losses/correlation.py
openretina/modules/losses/mse.py
openretina/modules/losses/poisson.py
openretina/modules/readout/__init__.py
openretina/modules/readout/base.py
openretina/modules/readout/factorised_gaussian.py
openretina/modules/readout/multi_readout.py
openretina/utils/__init__.py
openretina/utils/capture_output.py
openretina/utils/constants.py
openretina/utils/file_utils.py
openretina/utils/h5_handling.py
openretina/utils/misc.py
openretina/utils/model_utils.py
openretina/utils/nnfabrik_model_loading.py
openretina/utils/plotting.py
openretina/utils/video_analysis.py