ALLCools
ALLCools: ALL Cytosine tools
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Installation
Introduction
CELL LEVEL ANALYSIS
Basic Clustering Walk-through
Basic Cell Clustering Using 100Kb Bins
Basic Cell Clustering Using mCG-5Kb Bins
Step-by-step Clustering Analysis
Cell Basic Filtering
Feature Basic Filtering
Calculate Highly Variable Features And Get mC Fraction AnnData
Preclustering and Cluster Enriched Features
Preclustering and Cluster Enriched Features
Decomposition And Embedding
Consensus Clustering
Differential Methylated Genes Analysis
Calculate Gene mC Fractions
Differential Methylated Genes - Pairwise
Plot Cluster DMGs
Differential Methylated Genes Analysis
Calculate Cell Doublet Score
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Installation
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ALLCools: ALL Cytosine tools
Introduction