LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
moPepGen/SeqFeature.py
moPepGen/__init__.py
moPepGen/constant.py
moPepGen/err.py
moPepGen/fake.py
moPepGen/index.py
moPepGen/params.py
moPepGen/version.py
moPepGen/aa/AminoAcidSeqDict.py
moPepGen/aa/AminoAcidSeqRecord.py
moPepGen/aa/PeptidePoolSplitter.py
moPepGen/aa/PeptidePoolSummarizer.py
moPepGen/aa/VariantPeptideIdentifier.py
moPepGen/aa/VariantPeptideLabel.py
moPepGen/aa/VariantPeptidePool.py
moPepGen/aa/__init__.py
moPepGen/aa/expasy_rules.py
moPepGen/circ/CircRNA.py
moPepGen/circ/__init__.py
moPepGen/circ/io.py
moPepGen/cli/__init__.py
moPepGen/cli/__main__.py
moPepGen/cli/call_alt_translation.py
moPepGen/cli/call_novel_orf.py
moPepGen/cli/call_variant_peptide.py
moPepGen/cli/common.py
moPepGen/cli/decoy_fasta.py
moPepGen/cli/encode_fasta.py
moPepGen/cli/filter_fasta.py
moPepGen/cli/generate_index.py
moPepGen/cli/index_gvf.py
moPepGen/cli/merge_fasta.py
moPepGen/cli/parse_arriba.py
moPepGen/cli/parse_circexplorer.py
moPepGen/cli/parse_fusion_catcher.py
moPepGen/cli/parse_reditools.py
moPepGen/cli/parse_rmats.py
moPepGen/cli/parse_star_fusion.py
moPepGen/cli/parse_vep.py
moPepGen/cli/split_fasta.py
moPepGen/cli/summarize_fasta.py
moPepGen/cli/update_index.py
moPepGen/data/gencode_hs_exclusion_list.txt
moPepGen/dna/DNASeqDict.py
moPepGen/dna/DNASeqRecord.py
moPepGen/dna/__init__.py
moPepGen/gtf/GTFPointer.py
moPepGen/gtf/GTFRecord.py
moPepGen/gtf/GTFSeqFeature.py
moPepGen/gtf/GTFSourceInferrer.py
moPepGen/gtf/GeneAnnotationModel.py
moPepGen/gtf/GenomicAnnotation.py
moPepGen/gtf/GenomicAnnotationOnDisk.py
moPepGen/gtf/GtfIO.py
moPepGen/gtf/TranscriptAnnotationModel.py
moPepGen/gtf/__init__.py
moPepGen/parser/ArribaParser.py
moPepGen/parser/CIRCexplorerParser.py
moPepGen/parser/FusionCatcherParser.py
moPepGen/parser/REDItoolsParser.py
moPepGen/parser/STARFusionParser.py
moPepGen/parser/VEPParser.py
moPepGen/parser/__init__.py
moPepGen/parser/RMATSParser/A3SSRecord.py
moPepGen/parser/RMATSParser/A5SSRecord.py
moPepGen/parser/RMATSParser/MXERecord.py
moPepGen/parser/RMATSParser/RIRecord.py
moPepGen/parser/RMATSParser/RMATSRecord.py
moPepGen/parser/RMATSParser/SERecord.py
moPepGen/parser/RMATSParser/__init__.py
moPepGen/seqvar/GVFIndex.py
moPepGen/seqvar/GVFMetadata.py
moPepGen/seqvar/GVFMetadataInfo.py
moPepGen/seqvar/SplicingJunction.py
moPepGen/seqvar/VariantRecord.py
moPepGen/seqvar/VariantRecordPool.py
moPepGen/seqvar/VariantRecordPoolOnDisk.py
moPepGen/seqvar/VariantRecordWithCoordinate.py
moPepGen/seqvar/__init__.py
moPepGen/seqvar/io.py
moPepGen/svgraph/PVGNode.py
moPepGen/svgraph/PVGNodeCollapser.py
moPepGen/svgraph/PVGOrf.py
moPepGen/svgraph/PeptideVariantGraph.py
moPepGen/svgraph/SubgraphTree.py
moPepGen/svgraph/TVGCursor.py
moPepGen/svgraph/TVGEdge.py
moPepGen/svgraph/TVGNode.py
moPepGen/svgraph/TVGNodeCollapser.py
moPepGen/svgraph/ThreeFrameCVG.py
moPepGen/svgraph/ThreeFrameTVG.py
moPepGen/svgraph/VariantCombinations.py
moPepGen/svgraph/VariantPeptideDict.py
moPepGen/svgraph/VariantPeptideTable.py
moPepGen/svgraph/__init__.py
moPepGen/util/ResourcesMonitor.py
moPepGen/util/__init__.py
moPepGen/util/__main__.py
moPepGen/util/add_fuzz_test_log.py
moPepGen/util/brute_force.py
moPepGen/util/brute_force_novel_orf.py
moPepGen/util/common.py
moPepGen/util/downsample_reference.py
moPepGen/util/extract_gvf.py
moPepGen/util/fuzz_test.py
moPepGen/util/validate_novel_orf_calling.py
moPepGen/util/validate_variant_calling.py
mopepgen.egg-info/PKG-INFO
mopepgen.egg-info/SOURCES.txt
mopepgen.egg-info/dependency_links.txt
mopepgen.egg-info/entry_points.txt
mopepgen.egg-info/requires.txt
mopepgen.egg-info/top_level.txt