# Expected under: genosecretor DATA --build <build> --method two-marker
# Unphased files use --assume-trans by default (S06_seSew → weak-secretor).
IID	scenario	expected_status	expected_qc	notes
S01_SeSe	determined	secretor	PASS	Se/Se
S02_Sese	determined	secretor	PASS	Se/se
S03_sese	determined	non-secretor	PASS	se/se
S04_SeSew	determined	secretor	PASS	Se/Se^w
S05_SewSew	determined	weak-secretor	PASS	Se^w/Se^w
S06_seSew	determined	weak-secretor	PASS	Se^w/se (--assume-trans default)
S07_SeSe_dup	determined	secretor	PASS	duplicate Se/Se
S08_sese_dup	determined	non-secretor	PASS	duplicate se/se
S09_miss428	missing	NA	MISSING_MARKER	rs601338 missing (two-marker)
S10_miss385	missing	NA	MISSING_MARKER	rs1047781 missing (two-marker)
S11_missAll	missing	NA	MISSING_MARKER	all markers missing
S12_proxy_only	missing	NA	MISSING_MARKER	proxy present but unused by two-marker
S13_missProxy	determined	non-secretor	PASS	miss rs602662 only; still se/se
S14_conflict_proxy	determined	secretor	PASS	proxy disagrees; unused by two-marker

