Guidance on how to interpret the contents of this table can be found here
| 0. Observation | |
| 2. Observation.status | |
| Fixed Value | final |
| 4. Observation.code | |
| 6. Observation.code.coding | |
| 8. Observation.code.coding.system | |
| Fixed Value | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs |
| 10. Observation.code.coding.version | |
| Note | This is a business version Id, not a resource version Id (see discussion) |
| Pattern Value | 3.0.0 |
| 12. Observation.code.coding.code | |
| Fixed Value | diagnostic-implication |
| 14. Observation.derivedFrom:rarelinkVariant | |
| Slice Name | rarelinkVariant |
| Control | 1..1 |
| 16. Observation.derivedFrom:rarelinkVariant.reference | |
| Control | 1..? |
| 18. Observation.component:evidenceLevel | |
| Slice Name | evidenceLevel |
| Control | 0..1 |
| 20. Observation.component:evidenceLevel.extension:workflow-relatedArtifactComponent | |
| Slice Name | workflow-relatedArtifactComponent |
| 22. Observation.component:evidenceLevel.code | |
| 24. Observation.component:evidenceLevel.code.coding | |
| 26. Observation.component:evidenceLevel.code.coding.system | |
| Fixed Value | http://loinc.org |
| 28. Observation.component:evidenceLevel.code.coding.code | |
| Pattern Value | 93044-6 |
| 30. Observation.component:evidenceLevel.value[x] | |
| Binding | The codes SHALL be taken from Level of Evidence Value Set (required to https://github.com/BIH-CEI/RareLink/ValueSet/level-of-evidence-vs) |
| Type | CodeableConcept |
| [x] Note | SeeChoice of Data Typesfor further information about how to use [x] |
| 32. Observation.component:clinicalSignificance | |
| Slice Name | clinicalSignificance |
| Control | 0..1 |
| 34. Observation.component:clinicalSignificance.extension:workflow-relatedArtifactComponent | |
| Slice Name | workflow-relatedArtifactComponent |
| 36. Observation.component:clinicalSignificance.code | |
| 38. Observation.component:clinicalSignificance.code.coding | |
| 40. Observation.component:clinicalSignificance.code.coding.system | |
| Fixed Value | http://loinc.org |
| 42. Observation.component:clinicalSignificance.code.coding.code | |
| Pattern Value | 53037-8 |
| 44. Observation.component:clinicalSignificance.value[x] | |
| Binding | The codes SHALL be taken from Clinical Significance Value Set (required to https://github.com/BIH-CEI/RareLink/ValueSet/clinical-significance-vs) |
| Type | CodeableConcept |
| [x] Note | SeeChoice of Data Typesfor further information about how to use [x] |
| 46. Observation.component:predictedPhenotype | |
| Slice Name | predictedPhenotype |
| Control | 0..1 |
| 48. Observation.component:predictedPhenotype.extension:workflow-relatedArtifactComponent | |
| Slice Name | workflow-relatedArtifactComponent |
| 50. Observation.component:predictedPhenotype.code | |
| 52. Observation.component:predictedPhenotype.code.coding | |
| 54. Observation.component:predictedPhenotype.code.coding.system | |
| Fixed Value | http://loinc.org |
| 56. Observation.component:predictedPhenotype.code.coding.code | |
| Pattern Value | 81259-4 |
| 58. Observation.component:predictedPhenotype.value[x] | |
| Type | CodeableConcept |
| [x] Note | SeeChoice of Data Typesfor further information about how to use [x] |
| 60. Observation.component:predictedPhenotype.value[x].coding | |
| Slicing | This element introduces a set of slices on Observation.component.value[x].coding. The slices areUnordered and Closed, and can be differentiated using the following discriminators: |
| 62. Observation.component:predictedPhenotype.value[x].coding:mondo | |
| Slice Name | mondo |
| Control | 0..* |
| 64. Observation.component:predictedPhenotype.value[x].coding:mondo.system | |
| Control | 1..? |
| Fixed Value | http://purl.obolibrary.org/obo/mondo.owl |
| 66. Observation.component:predictedPhenotype.value[x].coding:omim | |
| Slice Name | omim |
| Control | 0..* |
| 68. Observation.component:predictedPhenotype.value[x].coding:omim.system | |
| Control | 1..? |
| Fixed Value | http://omim.org |