Name
Required
Extensible
Preferred
Example
Observation
id
meta
implicitRules
language
CommonLanguages
text
contained
Slices for extension
extension:secondary-finding
extension:body-structure
modifierExtension
identifier
basedOn
partOf
status
ObservationStatus
Slices for category
ObservationCategoryCodes
category:labCategory
ObservationCategoryCodes
id
extension
coding
text
category:geCategory
ObservationCategoryCodes
id
extension
coding
text
code
LOINCCodes
id
extension
coding
id
extension
system
version
code
display
userSelected
text
subject
id
extension
reference
type
ResourceType
identifier
display
focus
encounter
effective[x]
issued
performer
Slices for value[x]
value[x]:valueCodeableConcept
LOINC Answer List LL1971-2
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
note
bodySite
SNOMEDCTBodyStructures
method
LOINC Answer List LL4048-6
id
extension
coding
Structural Variant Method Value Set
text
specimen
device
referenceRange
id
extension
modifierExtension
low
high
type
ObservationReferenceRangeMeaningCodes
appliesTo
ObservationReferenceRangeAppliesToCodes
age
text
hasMember
derivedFrom
Slices for component
component:All Slices
id
extension
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:conclusion-string
id
extension
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:gene-studied
id
extension
modifierExtension
code
LOINCCodes
value[x]
HUGO Gene Nomenclature Committee Gene Names (HGNC)
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:cytogenetic-location
id
extension
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:reference-sequence-assembly
id
extension
modifierExtension
code
LOINCCodes
value[x]
LOINC Answer List LL1040-6
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:chromosome-identifier
id
extension
modifierExtension
code
LOINCCodes
value[x]
LOINC Answer List LL2938-0
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:representative-coding-hgvs
id
extension
modifierExtension
code
LOINCCodes
value[x]
Human Genome Variation Society (HGVS) Nomenclature
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:genomic-hgvs
id
extension
modifierExtension
code
LOINCCodes
value[x]
Human Genome Variation Society (HGVS) Nomenclature
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:cytogenomic-nomenclature
id
extension
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:genomic-ref-seq
id
extension
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:representative-protein-ref-seq
id
extension
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:representative-transcript-ref-seq
id
extension
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:exact-start-end
id
extension
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:inner-start-end
id
extension
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:outer-start-end
id
extension
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:coordinate-system
id
extension
modifierExtension
code
LOINCCodes
value[x]
LOINC Answer List LL5323-2
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:ref-allele
id
extension
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:alt-allele
id
extension
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:coding-change-type
id
extension
modifierExtension
code
LOINCCodes
value[x]
DNA Change Type
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:genomic-source-class
id
extension
modifierExtension
code
LOINCCodes
value[x]
LOINC Answer List LL378-1
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:sample-allelic-frequency
id
extension
modifierExtension
code
LOINCCodes
value[x]
id
extension
value
comparator
QuantityComparator
unit
system
code
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:allelic-read-depth
id
extension
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:allelic-state
id
extension
modifierExtension
code
LOINCCodes
value[x]
LOINC Answer List LL381-5
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:variant-inheritance
id
extension
modifierExtension
code
LOINCCodes
value[x]
LOINC Answer List LL5489-1
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:variant-inheritance-basis
id
extension
modifierExtension
code
LOINCCodes
value[x]
LOINC Answer List LL4050-2
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:variation-code
id
extension
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:representative-protein-hgvs
id
extension
modifierExtension
code
LOINCCodes
value[x]
Human Genome Variation Society (HGVS) Nomenclature
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:copy-number
id
extension
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:variant-confidence-status
id
extension
modifierExtension
code
LOINCCodes
value[x]
Variant Confidence Status
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:repeat-motif
id
Slices for extension
extension:repeat-motif-order
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:repeat-number
id
Slices for extension
extension:repeat-motif-order
modifierExtension
code
LOINCCodes
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:genomicHgvs
id
extension
modifierExtension
code
LOINCCodes
id
extension
coding
id
extension
system
version
code
display
userSelected
text
value[x]
id
extension
coding
id
extension
system
version
code
display
userSelected
text
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:genomicRefSeq
id
extension
modifierExtension
code
LOINCCodes
id
extension
coding
id
extension
system
version
code
display
userSelected
text
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:representativeCodingHgvs
id
extension
modifierExtension
code
LOINCCodes
id
extension
coding
id
extension
system
version
code
display
userSelected
text
value[x]
id
extension
coding
id
extension
system
version
code
display
userSelected
text
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:representativeTranscriptRefSeq
id
extension
modifierExtension
code
LOINCCodes
id
extension
coding
id
extension
system
version
code
display
userSelected
text
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:representativeProteinHgvs
id
extension
modifierExtension
code
LOINCCodes
id
extension
coding
id
extension
system
version
code
display
userSelected
text
value[x]
id
extension
coding
id
extension
system
version
code
display
userSelected
text
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:representativeProteinRefSeq
id
extension
modifierExtension
code
LOINCCodes
id
extension
coding
id
extension
system
version
code
display
userSelected
text
value[x]
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:referenceSequenceAssembly
id
extension
modifierExtension
code
LOINCCodes
id
extension
coding
id
extension
system
version
code
display
userSelected
text
value[x]
Reference Genome Value Set
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:geneStudied
id
extension
modifierExtension
code
LOINCCodes
id
extension
coding
id
extension
system
version
code
display
userSelected
text
value[x]
id
extension
coding
id
extension
system
version
code
display
userSelected
text
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:allelicState
id
extension
modifierExtension
code
LOINCCodes
id
extension
coding
id
extension
system
version
code
display
userSelected
text
value[x]
Zygosity Value Set
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:genomicSourceClass
id
extension
modifierExtension
code
LOINCCodes
id
extension
coding
id
extension
system
version
code
display
userSelected
text
value[x]
Genomic Source Class Value Set
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
component:codingChangeType
id
extension
modifierExtension
code
LOINCCodes
id
extension
coding
id
extension
system
version
code
display
userSelected
text
value[x]
DNA Change Type Value Set
dataAbsentReason
DataAbsentReason
interpretation
ObservationInterpretationCodes
referenceRange
Documentation for this format