molecular_simulations package

Subpackages

• molecular_simulations.analysis package
  • Submodules
    • molecular_simulations.analysis.autocluster module
      • GenericDataloader
      • PeriodicDataloader
      • AutoKMeans
      • Decomposition
    • molecular_simulations.analysis.constant_pH_analysis module
    • molecular_simulations.analysis.cov_ppi module
    • molecular_simulations.analysis.fingerprinter module
    • molecular_simulations.analysis.interaction_energy module
    • molecular_simulations.analysis.ipSAE module
    • molecular_simulations.analysis.sasa module
    • molecular_simulations.analysis.utils module
• molecular_simulations.build package
  • Submodules
    • molecular_simulations.build.build_amber module
    • molecular_simulations.build.build_calvados module
    • molecular_simulations.build.build_interface module
    • molecular_simulations.build.build_ligand module
• molecular_simulations.simulate package
  • Submodules
    • molecular_simulations.simulate.free_energy module
    • molecular_simulations.simulate.mmpbsa module
    • molecular_simulations.simulate.multires_simulator module
    • molecular_simulations.simulate.omm_simulator module
    • molecular_simulations.simulate.reporters module
• molecular_simulations.utils package
  • Submodules
    • molecular_simulations.utils.amber_utils module
    • molecular_simulations.utils.mda_utils module
    • molecular_simulations.utils.parsl_settings module

Submodules

• molecular_simulations.logging_config module