ont-bonito==1.1.0
torch==2.13.0
torchaudio==2.11.0
torchvision==0.28.0
ont-koi==0.6.5
Cython==3.2.9
setuptools==77.0.3
numpy==2.4.6
pyranges==0.1.4
pybigwig==0.3.25
pyfaidx==0.9.0.4
torchmetrics==1.9.0
mappy==2.31
fitter
gtfparse==2.0.1
pyslow5==1.3.1
blue-crab==0.4.0
toml==0.10.2
tqdm<5,>4
scipy
pysam==0.24.0
parasail==1.3.4
pandas==3.0.5
requests~=2.32.2
ont-fast5-api==4.1.3
fast-ctc-decode==0.3.5
python-dateutil==2.8.2
pytorch-ranger==0.1.1
dtaidistance==2.3.11
torch_pruning==1.3.7
ruptures==1.1.9
tslearn==0.6.3
patchworklib==0.6.3
plotnine==0.12.4
matplotlib==3.10.8
seaborn==0.13.2
biopython==1.86
igv==0.9.6
deap==1.4.1
tabulate==0.9.0
onnx-simplifier==0.4.36
onnx2torch==1.5.14
onnxconverter-common
onnxmltools==1.12.0
onnxruntime-gpu==1.22.0
onnxscript==0.5.1
memory-efficient-attention-pytorch==0.1.6
edlib==1.3.9
ont-remora
rotary-embedding-torch==0.8.3
debugpy==1.8.8
statsmodels
transformers
uncalled4
lhotse
nltk==3.9.1
muon_optimizer==0.1.0
accelerate
flashlight==0.1.1
flashlight-text==0.0.7
pyabf
hyperopt
tensorboard
