LICENSE
README.md
pyproject.toml
bigecyhmm/__init__.py
bigecyhmm/__main__.py
bigecyhmm/custom_db.py
bigecyhmm/custom_tsv_parser.py
bigecyhmm/diagram_cycles.py
bigecyhmm/group_analysis.py
bigecyhmm/group_plot.py
bigecyhmm/hmm_search.py
bigecyhmm/utils.py
bigecyhmm/visualisation.py
bigecyhmm.egg-info/PKG-INFO
bigecyhmm.egg-info/SOURCES.txt
bigecyhmm.egg-info/dependency_links.txt
bigecyhmm.egg-info/entry_points.txt
bigecyhmm.egg-info/requires.txt
bigecyhmm.egg-info/top_level.txt
bigecyhmm/hmm_databases/README.md
bigecyhmm/hmm_databases/custom_carbon_cycle.json
bigecyhmm/hmm_databases/custom_hydrogen_central_cycles.tsv
bigecyhmm/hmm_databases/custom_nitrogen_cycle.json
bigecyhmm/hmm_databases/custom_other_cycle.json
bigecyhmm/hmm_databases/custom_phosphorus_cycle.json
bigecyhmm/hmm_databases/custom_sulfur_cycle.json
bigecyhmm/hmm_databases/cycle_genes_phosphorus.tsv
bigecyhmm/hmm_databases/cycle_pathways.tsv
bigecyhmm/hmm_databases/hmm_table_template.tsv
bigecyhmm/hmm_databases/hydrogenotrophic_salt_caverns.json
bigecyhmm/hmm_databases/hmm_files/Cyc1.hmm
bigecyhmm/hmm_databases/hmm_files/Cyc2_repCluster1.hmm
bigecyhmm/hmm_databases/hmm_files/Cyc2_repCluster2.hmm
bigecyhmm/hmm_databases/hmm_files/Cyc2_repCluster3.hmm
bigecyhmm/hmm_databases/hmm_files/CymA.hmm
bigecyhmm/hmm_databases/hmm_files/DFE_0448.hmm
bigecyhmm/hmm_databases/hmm_files/DFE_0449.hmm
bigecyhmm/hmm_databases/hmm_files/DFE_0450.hmm
bigecyhmm/hmm_databases/hmm_files/DFE_0451.hmm
bigecyhmm/hmm_databases/hmm_files/DFE_0461.hmm
bigecyhmm/hmm_databases/hmm_files/DFE_0462.hmm
bigecyhmm/hmm_databases/hmm_files/DFE_0463.hmm
bigecyhmm/hmm_databases/hmm_files/DFE_0464.hmm
bigecyhmm/hmm_databases/hmm_files/DFE_0465.hmm
bigecyhmm/hmm_databases/hmm_files/DmkA.hmm
bigecyhmm/hmm_databases/hmm_files/DmkB.hmm
bigecyhmm/hmm_databases/hmm_files/EetA.hmm
bigecyhmm/hmm_databases/hmm_files/EetB.hmm
bigecyhmm/hmm_databases/hmm_files/FmnA.hmm
bigecyhmm/hmm_databases/hmm_files/FmnB.hmm
bigecyhmm/hmm_databases/hmm_files/FoxA.hmm
bigecyhmm/hmm_databases/hmm_files/FoxB.hmm
bigecyhmm/hmm_databases/hmm_files/FoxC.hmm
bigecyhmm/hmm_databases/hmm_files/FoxE.hmm
bigecyhmm/hmm_databases/hmm_files/FoxY.hmm
bigecyhmm/hmm_databases/hmm_files/FoxZ.hmm
bigecyhmm/hmm_databases/hmm_files/K00001.hmm
bigecyhmm/hmm_databases/hmm_files/K00002.hmm
bigecyhmm/hmm_databases/hmm_files/K00016.hmm
bigecyhmm/hmm_databases/hmm_files/K00114.hmm
bigecyhmm/hmm_databases/hmm_files/K00117.hmm
bigecyhmm/hmm_databases/hmm_files/K00123.hmm
bigecyhmm/hmm_databases/hmm_files/K00124.hmm
bigecyhmm/hmm_databases/hmm_files/K00125.hmm
bigecyhmm/hmm_databases/hmm_files/K00129.hmm
bigecyhmm/hmm_databases/hmm_files/K00138.hmm
bigecyhmm/hmm_databases/hmm_files/K00169.hmm
bigecyhmm/hmm_databases/hmm_files/K00194.hmm
bigecyhmm/hmm_databases/hmm_files/K00197.hmm
bigecyhmm/hmm_databases/hmm_files/K00198.hmm
bigecyhmm/hmm_databases/hmm_files/K00241.hmm
bigecyhmm/hmm_databases/hmm_files/K00242.hmm
bigecyhmm/hmm_databases/hmm_files/K00249.hmm
bigecyhmm/hmm_databases/hmm_files/K00255.hmm
bigecyhmm/hmm_databases/hmm_files/K00330.hmm
bigecyhmm/hmm_databases/hmm_files/K00331.hmm
bigecyhmm/hmm_databases/hmm_files/K00332.hmm
bigecyhmm/hmm_databases/hmm_files/K00380.hmm
bigecyhmm/hmm_databases/hmm_files/K00390.hmm
bigecyhmm/hmm_databases/hmm_files/K00394.hmm
bigecyhmm/hmm_databases/hmm_files/K00402.hmm
bigecyhmm/hmm_databases/hmm_files/K00410.hmm
bigecyhmm/hmm_databases/hmm_files/K00411.hmm
bigecyhmm/hmm_databases/hmm_files/K00412.hmm
bigecyhmm/hmm_databases/hmm_files/K00532.hmm
bigecyhmm/hmm_databases/hmm_files/K00548.hmm
bigecyhmm/hmm_databases/hmm_files/K00549.hmm
bigecyhmm/hmm_databases/hmm_files/K00558.hmm
bigecyhmm/hmm_databases/hmm_files/K00656.hmm
bigecyhmm/hmm_databases/hmm_files/K00789.hmm
bigecyhmm/hmm_databases/hmm_files/K00812.hmm
bigecyhmm/hmm_databases/hmm_files/K00813.hmm
bigecyhmm/hmm_databases/hmm_files/K00817.hmm
bigecyhmm/hmm_databases/hmm_files/K00819.hmm
bigecyhmm/hmm_databases/hmm_files/K00821.hmm
bigecyhmm/hmm_databases/hmm_files/K00823.hmm
bigecyhmm/hmm_databases/hmm_files/K00826.hmm
bigecyhmm/hmm_databases/hmm_files/K00830.hmm
bigecyhmm/hmm_databases/hmm_files/K00831.hmm
bigecyhmm/hmm_databases/hmm_files/K00832.hmm
bigecyhmm/hmm_databases/hmm_files/K00840.hmm
bigecyhmm/hmm_databases/hmm_files/K00860.hmm
bigecyhmm/hmm_databases/hmm_files/K00937.hmm
bigecyhmm/hmm_databases/hmm_files/K00955.hmm
bigecyhmm/hmm_databases/hmm_files/K00956.hmm
bigecyhmm/hmm_databases/hmm_files/K00957.hmm
bigecyhmm/hmm_databases/hmm_files/K01026.hmm
bigecyhmm/hmm_databases/hmm_files/K01077.hmm
bigecyhmm/hmm_databases/hmm_files/K01078.hmm
bigecyhmm/hmm_databases/hmm_files/K01083.hmm
bigecyhmm/hmm_databases/hmm_files/K01093.hmm
bigecyhmm/hmm_databases/hmm_files/K01113.hmm
bigecyhmm/hmm_databases/hmm_files/K01176.hmm
bigecyhmm/hmm_databases/hmm_files/K01178.hmm
bigecyhmm/hmm_databases/hmm_files/K01179.hmm
bigecyhmm/hmm_databases/hmm_files/K01183.hmm
bigecyhmm/hmm_databases/hmm_files/K01188.hmm
bigecyhmm/hmm_databases/hmm_files/K01190.hmm
bigecyhmm/hmm_databases/hmm_files/K01192.hmm
bigecyhmm/hmm_databases/hmm_files/K01195.hmm
bigecyhmm/hmm_databases/hmm_files/K01198.hmm
bigecyhmm/hmm_databases/hmm_files/K01200.hmm
bigecyhmm/hmm_databases/hmm_files/K01207.hmm
bigecyhmm/hmm_databases/hmm_files/K01209.hmm
bigecyhmm/hmm_databases/hmm_files/K01214.hmm
bigecyhmm/hmm_databases/hmm_files/K01218.hmm
bigecyhmm/hmm_databases/hmm_files/K01243.hmm
bigecyhmm/hmm_databases/hmm_files/K01251.hmm
bigecyhmm/hmm_databases/hmm_files/K01507.hmm
bigecyhmm/hmm_databases/hmm_files/K01514.hmm
bigecyhmm/hmm_databases/hmm_files/K01531.hmm
bigecyhmm/hmm_databases/hmm_files/K01560.hmm
bigecyhmm/hmm_databases/hmm_files/K01601.hmm
bigecyhmm/hmm_databases/hmm_files/K01604.hmm
bigecyhmm/hmm_databases/hmm_files/K01612.hmm
bigecyhmm/hmm_databases/hmm_files/K01672.hmm
bigecyhmm/hmm_databases/hmm_files/K01673.hmm
bigecyhmm/hmm_databases/hmm_files/K01674.hmm
bigecyhmm/hmm_databases/hmm_files/K01726.hmm
bigecyhmm/hmm_databases/hmm_files/K01738.hmm
bigecyhmm/hmm_databases/hmm_files/K01739.hmm
bigecyhmm/hmm_databases/hmm_files/K01740.hmm
bigecyhmm/hmm_databases/hmm_files/K01743.hmm
bigecyhmm/hmm_databases/hmm_files/K01760.hmm
bigecyhmm/hmm_databases/hmm_files/K01779.hmm
bigecyhmm/hmm_databases/hmm_files/K01811.hmm
bigecyhmm/hmm_databases/hmm_files/K01847.hmm
bigecyhmm/hmm_databases/hmm_files/K01895.hmm
bigecyhmm/hmm_databases/hmm_files/K01938.hmm
bigecyhmm/hmm_databases/hmm_files/K02039.hmm
bigecyhmm/hmm_databases/hmm_files/K02040.hmm
bigecyhmm/hmm_databases/hmm_files/K02044.hmm
bigecyhmm/hmm_databases/hmm_files/K02111.hmm
bigecyhmm/hmm_databases/hmm_files/K02112.hmm
bigecyhmm/hmm_databases/hmm_files/K02117.hmm
bigecyhmm/hmm_databases/hmm_files/K02118.hmm
bigecyhmm/hmm_databases/hmm_files/K02298.hmm
bigecyhmm/hmm_databases/hmm_files/K02299.hmm
bigecyhmm/hmm_databases/hmm_files/K02619.hmm
bigecyhmm/hmm_databases/hmm_files/K03119.hmm
bigecyhmm/hmm_databases/hmm_files/K03186.hmm
bigecyhmm/hmm_databases/hmm_files/K03342.hmm
bigecyhmm/hmm_databases/hmm_files/K03381.hmm
bigecyhmm/hmm_databases/hmm_files/K03518.hmm
bigecyhmm/hmm_databases/hmm_files/K03519.hmm
bigecyhmm/hmm_databases/hmm_files/K03520.hmm
bigecyhmm/hmm_databases/hmm_files/K03788.hmm
bigecyhmm/hmm_databases/hmm_files/K03918.hmm
bigecyhmm/hmm_databases/hmm_files/K04022.hmm
bigecyhmm/hmm_databases/hmm_files/K04072.hmm
bigecyhmm/hmm_databases/hmm_files/K04091.hmm
bigecyhmm/hmm_databases/hmm_files/K04112.hmm
bigecyhmm/hmm_databases/hmm_files/K04113.hmm
bigecyhmm/hmm_databases/hmm_files/K04114.hmm
bigecyhmm/hmm_databases/hmm_files/K04115.hmm
bigecyhmm/hmm_databases/hmm_files/K04480.hmm
bigecyhmm/hmm_databases/hmm_files/K05343.hmm
bigecyhmm/hmm_databases/hmm_files/K05349.hmm
bigecyhmm/hmm_databases/hmm_files/K05350.hmm
bigecyhmm/hmm_databases/hmm_files/K05396.hmm
bigecyhmm/hmm_databases/hmm_files/K05572.hmm
bigecyhmm/hmm_databases/hmm_files/K05573.hmm
bigecyhmm/hmm_databases/hmm_files/K05574.hmm
bigecyhmm/hmm_databases/hmm_files/K05606.hmm
bigecyhmm/hmm_databases/hmm_files/K05780.hmm
bigecyhmm/hmm_databases/hmm_files/K05781.hmm
bigecyhmm/hmm_databases/hmm_files/K05825.hmm
bigecyhmm/hmm_databases/hmm_files/K05830.hmm
bigecyhmm/hmm_databases/hmm_files/K05989.hmm
bigecyhmm/hmm_databases/hmm_files/K06137.hmm
bigecyhmm/hmm_databases/hmm_files/K06163.hmm
bigecyhmm/hmm_databases/hmm_files/K06164.hmm
bigecyhmm/hmm_databases/hmm_files/K06165.hmm
bigecyhmm/hmm_databases/hmm_files/K06166.hmm
bigecyhmm/hmm_databases/hmm_files/K06324.hmm
bigecyhmm/hmm_databases/hmm_files/K06445.hmm
bigecyhmm/hmm_databases/hmm_files/K06446.hmm
bigecyhmm/hmm_databases/hmm_files/K07093.hmm
bigecyhmm/hmm_databases/hmm_files/K07173.hmm
bigecyhmm/hmm_databases/hmm_files/K07250.hmm
bigecyhmm/hmm_databases/hmm_files/K07306.hmm
bigecyhmm/hmm_databases/hmm_files/K07405.hmm
bigecyhmm/hmm_databases/hmm_files/K07636.hmm
bigecyhmm/hmm_databases/hmm_files/K07657.hmm
bigecyhmm/hmm_databases/hmm_files/K07699.hmm
bigecyhmm/hmm_databases/hmm_files/K08352.hmm
bigecyhmm/hmm_databases/hmm_files/K08968.hmm
bigecyhmm/hmm_databases/hmm_files/K09456.hmm
bigecyhmm/hmm_databases/hmm_files/K09474.hmm
bigecyhmm/hmm_databases/hmm_files/K09478.hmm
bigecyhmm/hmm_databases/hmm_files/K11358.hmm
bigecyhmm/hmm_databases/hmm_files/K11410.hmm
bigecyhmm/hmm_databases/hmm_files/K12111.hmm
bigecyhmm/hmm_databases/hmm_files/K12308.hmm
bigecyhmm/hmm_databases/hmm_files/K12339.hmm
bigecyhmm/hmm_databases/hmm_files/K12373.hmm
bigecyhmm/hmm_databases/hmm_files/K13381.hmm
bigecyhmm/hmm_databases/hmm_files/K13524.hmm
bigecyhmm/hmm_databases/hmm_files/K13954.hmm
bigecyhmm/hmm_databases/hmm_files/K14082.hmm
bigecyhmm/hmm_databases/hmm_files/K14083.hmm
bigecyhmm/hmm_databases/hmm_files/K14138.hmm
bigecyhmm/hmm_databases/hmm_files/K14155.hmm
bigecyhmm/hmm_databases/hmm_files/K14268.hmm
bigecyhmm/hmm_databases/hmm_files/K14459.hmm
bigecyhmm/hmm_databases/hmm_files/K14466.hmm
bigecyhmm/hmm_databases/hmm_files/K14467.hmm
bigecyhmm/hmm_databases/hmm_files/K14468.hmm
bigecyhmm/hmm_databases/hmm_files/K14469.hmm
bigecyhmm/hmm_databases/hmm_files/K15241.hmm
bigecyhmm/hmm_databases/hmm_files/K15830.hmm
bigecyhmm/hmm_databases/hmm_files/K15921.hmm
bigecyhmm/hmm_databases/hmm_files/K15980.hmm
bigecyhmm/hmm_databases/hmm_files/K16176.hmm
bigecyhmm/hmm_databases/hmm_files/K16293.hmm
bigecyhmm/hmm_databases/hmm_files/K16294.hmm
bigecyhmm/hmm_databases/hmm_files/K16952.hmm
bigecyhmm/hmm_databases/hmm_files/K16954.hmm
bigecyhmm/hmm_databases/hmm_files/K16964.hmm
bigecyhmm/hmm_databases/hmm_files/K16967.hmm
bigecyhmm/hmm_databases/hmm_files/K16968.hmm
bigecyhmm/hmm_databases/hmm_files/K17219.hmm
bigecyhmm/hmm_databases/hmm_files/K17220.hmm
bigecyhmm/hmm_databases/hmm_files/K17221.hmm
bigecyhmm/hmm_databases/hmm_files/K17228.hmm
bigecyhmm/hmm_databases/hmm_files/K17995.hmm
bigecyhmm/hmm_databases/hmm_files/K17996.hmm
bigecyhmm/hmm_databases/hmm_files/K18244.hmm
bigecyhmm/hmm_databases/hmm_files/K18245.hmm
bigecyhmm/hmm_databases/hmm_files/K18246.hmm
bigecyhmm/hmm_databases/hmm_files/K18861.hmm
bigecyhmm/hmm_databases/hmm_files/K18916.hmm
bigecyhmm/hmm_databases/hmm_files/K19355.hmm
bigecyhmm/hmm_databases/hmm_files/K19668.hmm
bigecyhmm/hmm_databases/hmm_files/K19713.hmm
bigecyhmm/hmm_databases/hmm_files/K20542.hmm
bigecyhmm/hmm_databases/hmm_files/K21310.hmm
bigecyhmm/hmm_databases/hmm_files/K21566.hmm
bigecyhmm/hmm_databases/hmm_files/K21647.hmm
bigecyhmm/hmm_databases/hmm_files/K22348.hmm
bigecyhmm/hmm_databases/hmm_files/K22349.hmm
bigecyhmm/hmm_databases/hmm_files/K22350.hmm
bigecyhmm/hmm_databases/hmm_files/K22473.hmm
bigecyhmm/hmm_databases/hmm_files/K22515.hmm
bigecyhmm/hmm_databases/hmm_files/K22516.hmm
bigecyhmm/hmm_databases/hmm_files/K23351.hmm
bigecyhmm/hmm_databases/hmm_files/K23360.hmm
bigecyhmm/hmm_databases/hmm_files/K25220.hmm
bigecyhmm/hmm_databases/hmm_files/MtoA.hmm
bigecyhmm/hmm_databases/hmm_files/MtrA.hmm
bigecyhmm/hmm_databases/hmm_files/MtrB_TIGR03509.hmm
bigecyhmm/hmm_databases/hmm_files/MtrC_TIGR03507.hmm
bigecyhmm/hmm_databases/hmm_files/NF033774.1.hmm
bigecyhmm/hmm_databases/hmm_files/NF037997.1.hmm
bigecyhmm/hmm_databases/hmm_files/NF040654.hmm
bigecyhmm/hmm_databases/hmm_files/NF041323.hmm
bigecyhmm/hmm_databases/hmm_files/NF041487.hmm
bigecyhmm/hmm_databases/hmm_files/NF041608.hmm
bigecyhmm/hmm_databases/hmm_files/Ndh2.hmm
bigecyhmm/hmm_databases/hmm_files/OmcF.hmm
bigecyhmm/hmm_databases/hmm_files/OmcS.hmm
bigecyhmm/hmm_databases/hmm_files/OmcZ.hmm
bigecyhmm/hmm_databases/hmm_files/PF00296.hmm
bigecyhmm/hmm_databases/hmm_files/PF01053.hmm
bigecyhmm/hmm_databases/hmm_files/PF01613.hmm
bigecyhmm/hmm_databases/hmm_files/PF01654.hmm
bigecyhmm/hmm_databases/hmm_files/PF02332.hmm
bigecyhmm/hmm_databases/hmm_files/PF02335.hmm
bigecyhmm/hmm_databases/hmm_files/PF02406.hmm
bigecyhmm/hmm_databases/hmm_files/PF03892.hmm
bigecyhmm/hmm_databases/hmm_files/PF05048.hmm
bigecyhmm/hmm_databases/hmm_files/PF06099.hmm
bigecyhmm/hmm_databases/hmm_files/PF06778.hmm
bigecyhmm/hmm_databases/hmm_files/PF07682.hmm
bigecyhmm/hmm_databases/hmm_files/PF09242.hmm
bigecyhmm/hmm_databases/hmm_files/PF13486.hmm
bigecyhmm/hmm_databases/hmm_files/PplA.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR00016.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR00192.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR00193.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR00203.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR00314.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR00339.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR00455.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR00651.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR00780.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR00781.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR00782.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR01054.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR01282.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR01286.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR01287.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR01323.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR01422.2.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR01432.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR01433.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR01580.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR01660.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR01706.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR01792.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR01860.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR01861.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02034.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02188.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02318.1.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02320.1.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02326.1.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02335.1.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02374.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02376.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02378.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02658.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02659.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02693.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02694.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02717.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02818.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02819.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02821.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02847.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02866.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02882.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02891.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02929.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02930.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02931.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR02932.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03078.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03079.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03080.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03126.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03148.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03153.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03256.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03257.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03259.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03264.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03276.1.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03312.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03313.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03315.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03405.1.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03451.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03478.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03479.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03555.1.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR03888.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR04246.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR04266.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR04315.hmm
bigecyhmm/hmm_databases/hmm_files/TIGR04550.hmm
bigecyhmm/hmm_databases/hmm_files/acetate_citrate_lyase_aclA.hmm
bigecyhmm/hmm_databases/hmm_files/acetate_citrate_lyase_aclB.hmm
bigecyhmm/hmm_databases/hmm_files/aioA.hmm
bigecyhmm/hmm_databases/hmm_files/amoA.check.hmm
bigecyhmm/hmm_databases/hmm_files/amoA.hmm
bigecyhmm/hmm_databases/hmm_files/amoB.check.hmm
bigecyhmm/hmm_databases/hmm_files/amoB.hmm
bigecyhmm/hmm_databases/hmm_files/amoC.check.hmm
bigecyhmm/hmm_databases/hmm_files/amoC.hmm
bigecyhmm/hmm_databases/hmm_files/aprA.hmm
bigecyhmm/hmm_databases/hmm_files/aprB.hmm
bigecyhmm/hmm_databases/hmm_files/arrA.hmm
bigecyhmm/hmm_databases/hmm_files/arsC_glut.hmm
bigecyhmm/hmm_databases/hmm_files/arsC_thio.hmm
bigecyhmm/hmm_databases/hmm_files/arsM.hmm
bigecyhmm/hmm_databases/hmm_files/arxA.hmm
bigecyhmm/hmm_databases/hmm_files/aspA.hmm
bigecyhmm/hmm_databases/hmm_files/asrA.hmm
bigecyhmm/hmm_databases/hmm_files/asrB.hmm
bigecyhmm/hmm_databases/hmm_files/asrC.hmm
bigecyhmm/hmm_databases/hmm_files/dsrA.hmm
bigecyhmm/hmm_databases/hmm_files/dsrB.hmm
bigecyhmm/hmm_databases/hmm_files/dsrC.hmm
bigecyhmm/hmm_databases/hmm_files/dsrD.hmm
bigecyhmm/hmm_databases/hmm_files/dsrE.check.hmm
bigecyhmm/hmm_databases/hmm_files/dsrE.hmm
bigecyhmm/hmm_databases/hmm_files/dsrF.check.hmm
bigecyhmm/hmm_databases/hmm_files/dsrF.hmm
bigecyhmm/hmm_databases/hmm_files/dsrH.check.hmm
bigecyhmm/hmm_databases/hmm_files/dsrH.hmm
bigecyhmm/hmm_databases/hmm_files/dsrJ.hmm
bigecyhmm/hmm_databases/hmm_files/dsrK.hmm
bigecyhmm/hmm_databases/hmm_files/dsrM.hmm
bigecyhmm/hmm_databases/hmm_files/dsrO.hmm
bigecyhmm/hmm_databases/hmm_files/dsrP.hmm
bigecyhmm/hmm_databases/hmm_files/dsrR.hmm
bigecyhmm/hmm_databases/hmm_files/dsrS.hmm
bigecyhmm/hmm_databases/hmm_files/dsrT.hmm
bigecyhmm/hmm_databases/hmm_files/fe.hmm
bigecyhmm/hmm_databases/hmm_files/fefe-group-a13.hmm
bigecyhmm/hmm_databases/hmm_files/fefe-group-a2.hmm
bigecyhmm/hmm_databases/hmm_files/fefe-group-a4.hmm
bigecyhmm/hmm_databases/hmm_files/fefe-group-b.hmm
bigecyhmm/hmm_databases/hmm_files/fefe-group-c1.hmm
bigecyhmm/hmm_databases/hmm_files/fefe-group-c2.hmm
bigecyhmm/hmm_databases/hmm_files/fefe-group-c3.hmm
bigecyhmm/hmm_databases/hmm_files/fthfs.hmm
bigecyhmm/hmm_databases/hmm_files/fthfs_NF010030.hmm
bigecyhmm/hmm_databases/hmm_files/hydrazine_oxidase_hzoA.hmm
bigecyhmm/hmm_databases/hmm_files/hydrazine_synthase_hzsA.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_FeFeGroupA1.check.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_FeFeGroupA1.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_FeFeGroupA2.check.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_FeFeGroupA2.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_FeFeGroupA3.check.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_FeFeGroupA3.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_FeFeGroupA4.check.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_FeFeGroupA4.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_FeFeGroupB.check.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_FeFeGroupB.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_FeFeGroupC1.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_FeFeGroupC2.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_FeFeGroupC3.check.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_FeFeGroupC3.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_FeGroupFe.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup1a.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup1b.check.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup1b.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup1c.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup1d.check.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup1d.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup1e.check.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup1e.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup1f.check.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup1f.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup1g.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup1h.check.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup1h.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup1i.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup1j.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup1k.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup2a.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup2b.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup2c.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup2d.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup2e.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup3a.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup3b.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup3c.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup3d.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup4a.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup4b.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup4c.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup4d.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup4e.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup4f.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup4g.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup4h.hmm
bigecyhmm/hmm_databases/hmm_files/hydrogenase_NiFeGroup4i.hmm
bigecyhmm/hmm_databases/hmm_files/methanol_dehydrogenase_pqq_xoxF_mxaF.hmm
bigecyhmm/hmm_databases/hmm_files/nife-group-1.hmm
bigecyhmm/hmm_databases/hmm_files/nife-group-2ade.hmm
bigecyhmm/hmm_databases/hmm_files/nife-group-2bc.hmm
bigecyhmm/hmm_databases/hmm_files/nife-group-3abd.hmm
bigecyhmm/hmm_databases/hmm_files/nife-group-3c.hmm
bigecyhmm/hmm_databases/hmm_files/nife-group-4a-g.hmm
bigecyhmm/hmm_databases/hmm_files/nife-group-4hi.hmm
bigecyhmm/hmm_databases/hmm_files/nitric_oxide_reductase_norB.hmm
bigecyhmm/hmm_databases/hmm_files/nitric_oxide_reductase_norC.hmm
bigecyhmm/hmm_databases/hmm_files/nitrite_oxidoreductase_nxrA.hmm
bigecyhmm/hmm_databases/hmm_files/nitrite_oxidoreductase_nxrB.hmm
bigecyhmm/hmm_databases/hmm_files/nitrite_reductase_nirS.hmm
bigecyhmm/hmm_databases/hmm_files/nod.hmm
bigecyhmm/hmm_databases/hmm_files/pmoA.check.hmm
bigecyhmm/hmm_databases/hmm_files/pmoA.hmm
bigecyhmm/hmm_databases/hmm_files/pmoB.check.hmm
bigecyhmm/hmm_databases/hmm_files/pmoB.hmm
bigecyhmm/hmm_databases/hmm_files/pmoC.check.hmm
bigecyhmm/hmm_databases/hmm_files/pmoC.hmm
bigecyhmm/hmm_databases/hmm_files/rubisco_form_I.hmm
bigecyhmm/hmm_databases/hmm_files/rubisco_form_II.hmm
bigecyhmm/hmm_databases/hmm_files/rubisco_form_III.hmm
bigecyhmm/hmm_databases/hmm_files/rubisco_form_II_III.hmm
bigecyhmm/hmm_databases/hmm_files/rubisco_form_IV.hmm
bigecyhmm/hmm_databases/hmm_files/soxA.hmm
bigecyhmm/hmm_databases/hmm_files/soxB.hmm
bigecyhmm/hmm_databases/hmm_files/soxC.hmm
bigecyhmm/hmm_databases/hmm_files/soxD.hmm
bigecyhmm/hmm_databases/hmm_files/soxX.hmm
bigecyhmm/hmm_databases/hmm_files/soxY.hmm
bigecyhmm/hmm_databases/hmm_files/soxYZ_like_carrier.hmm
bigecyhmm/hmm_databases/hmm_files/soxZ.hmm
bigecyhmm/hmm_databases/hmm_files/sulfide_quinone_oxidoreductase_sqr.hmm
bigecyhmm/hmm_databases/hmm_files/sulfocyanin.hmm
bigecyhmm/hmm_databases/hmm_files/sulfur_dioxygenase_sdo.hmm
bigecyhmm/hmm_databases/hmm_files/test_HtxA.hmm
bigecyhmm/hmm_databases/hmm_files/test_HtxB.hmm
bigecyhmm/hmm_databases/hmm_files/test_ptxB.hmm
bigecyhmm/hmm_databases/hmm_files/thiosulfate_reductase_phsA.hmm
bigecyhmm/hmm_databases/hmm_files/tusB.check.hmm
bigecyhmm/hmm_databases/hmm_files/tusC.check.hmm
bigecyhmm/hmm_databases/hmm_files/tusD.check.hmm
bigecyhmm/templates/template_background.png
bigecyhmm/templates/template_carbon_cycle_total.png
bigecyhmm/templates/template_central_hydrogen.png
bigecyhmm/templates/template_nitrogen_cycle_total.png
bigecyhmm/templates/template_other_cycle_total.png
bigecyhmm/templates/template_phosphorus_cycle.png
bigecyhmm/templates/template_phosphorus_genes.png
bigecyhmm/templates/template_sulfur_cycle_total.png
tests/test_custom_db.py
tests/test_database.py
tests/test_diagram_cycles.py
tests/test_group_stats.py
tests/test_hmm_search.py
tests/test_utils.py
tests/test_visualisation.py