Ranked source windows and their combined scores. These windows are candidates for assembly; final sequences and placements are listed under Emitted products.
{% if ranked_candidates %}| Rank | Source / gene | Combined score | Top candidate window | Linked products |
|---|---|---|---|---|
| {% if candidate_details %}{{ candidate.rank }}{% else %}{{ candidate.rank }}{% endif %} | {{ candidate.gene }} ({{ candidate.kind }}) {{ candidate.source_id }} |
{{ candidate.score }} | {{ candidate.window }}{% if candidate.window_count > 1 %} {{ candidate.window_count }} retained windows{% endif %} |
{{ candidate.products }}{% for outcome in candidate.assembly_outcomes %} {{ outcome.modality }}: {{ outcome.outcome | replace('_', ' ') }}{% if outcome.shared %}; shared exact sequence{% endif %}{% endfor %} {% for decision in candidate.window_decisions %} Window decision {{ decision }}{% endfor %} |
Use --report-candidate-details to include grouped source windows and epitope tables.
No candidates passed ranking.
{% endif %}