LICENSE
README.rst
pyproject.toml
demo/demo_1_shepp_logan.py
demo/demo_2_large_object.py
demo/demo_3_cropped_center_recon.py
demo/demo_4_wrong_rotation_direction.py
demo/demo_5_fbp_fdk.py
demo/demo_6_qggmrf_denoiser.py
demo/demo_7_multiaxis_parallelbeam.py
demo/demo_8_helical_recon.py
demo/demo_9_anisotropic_voxels.py
demo/demo_slice_viewer.py
dev_scripts/QR-code/create-QR-code.py
docs/build/html/_static/new_model_template.py
docs/source/conf.py
docs/source/_static/new_model_template.py
experiments/start_viewer.py
experiments/alignment/alignment_exp_ORNL.py
experiments/alignment/alignment_experiment.py
experiments/alignment/alignment_utils.py
experiments/bh_curve_fit/bh_curve_fit_experiment_nozzle_data.py
experiments/bh_curve_fit/bh_curve_fit_experiment_simulated_data.py
experiments/bh_curve_fit/bh_curve_fit_utils.py
experiments/bugs_and_artifacts/center slice noise/center_slice.py
experiments/bugs_and_artifacts/center slice noise/center_slice_zeiss.py
experiments/bugs_and_artifacts/jax rounding bug/jax_rounding_bug.py
experiments/bugs_and_artifacts/jax rounding bug/jax_rounding_bug_v2.py
experiments/bugs_and_artifacts/jax rounding bug/parallel_beam.py
experiments/bugs_and_artifacts/jax rounding bug/lax_map_scatter_bug/minimal_lax_map_repro.py
experiments/bugs_and_artifacts/jax rounding bug/lax_map_scatter_bug/vmap_lax_map_demo.py
experiments/coimg-2025/fourier_response.py
experiments/coimg-2025/spectral_convergence.py
experiments/coimg-2025/spectral_response.py
experiments/coimg-2025/subset_investigation.py
experiments/coimg-2025/vcd_coimg_utils.py
experiments/coimg-2025/vcd_figs_for_COIMG_2025.py
experiments/coimg-2025/vcd_psf.py
experiments/cvpr-2024/vcd_figs_for_abst_v1.py
experiments/cvpr-2024/vcd_figs_for_abst_v2.py
experiments/hsnt/example_1_denoise_simulated_data.py
experiments/hsnt/example_3_a_fast_hyper_recon_dehydrate_and_export.py
experiments/hsnt/example_3_b_fast_hyper_recon_import_and_rehydrate.py
experiments/hsnt/example_4_test_hdf5_utils.py
experiments/hsnt/example_5_dinosaur.py
experiments/hsnt/mini_example_transmission.py
experiments/hsnt/plot_utils.py
experiments/minimal_projectors/minimal_forward_projection.py
experiments/minimal_projectors/minimal_forward_projection_torch.py
experiments/par_cone/demo_1_shepp_logan.py
experiments/par_cone/demo_2_microscopy.py
experiments/preprocessing/export_recon_hdf5_test.py
experiments/preprocessing/offset_correction.py
experiments/prox_map/prox_map_experiment.py
experiments/prox_map/prox_test.py
experiments/sandboxes/cone_beam_dev.py
experiments/sandboxes/cube_phantom.py
experiments/sandboxes/hdf5_test.py
experiments/sandboxes/parallel_model_dev.py
experiments/sandboxes/projection_ray_display_test.py
experiments/sandboxes/qggmrf_denoiser_sandbox.py
experiments/sandboxes/recon_experiments.py
experiments/sandboxes/sandbox_shepp_logan.py
experiments/sandboxes/shepp_logan_convergence.py
experiments/sandboxes/slice_dependent_noise.py
experiments/sandboxes/viewer_test.py
experiments/sharding/parallel_performance/device_put_check.py
experiments/sharding/parallel_performance/fbp_filter_parallelism_comparison.py
experiments/sharding/parallel_performance/sharding_scaling.py
experiments/sharding/scaling_tests/fbp_filter_capture_baseline.py
experiments/sharding/scaling_tests/fbp_filter_row_batch_sweep.py
experiments/sharding/scaling_tests/fbp_filter_scaling.py
experiments/sharding/scaling_tests/scaling_common.py
experiments/split_sino_recon/demo_split_sino_recon.py
experiments/timing_and_memory/cumulative_memory.py
experiments/timing_and_memory/display_results.py
experiments/timing_and_memory/evaluate_over_indices.py
experiments/timing_and_memory/initialize_evaluation.py
experiments/timing_and_memory/memory_use.py
experiments/timing_and_memory/memory_use_analysis.py
experiments/timing_and_memory/projection_timing.py
experiments/translation/TCT_anisotropic_voxels_exp.py
experiments/translation/TCT_generate_phantom.py
experiments/translation/TCT_physical_experiment.py
experiments/translation/TCT_simulation_experiment.py
experiments/translation/exp_view_offset_gradient.py
experiments/translation/loss_func_utils.py
experiments/zeiss/Cone_beam_exp_Zeiss.py
experiments/zeiss/convert_txrm_scan.py
experiments/zeiss/amir_baseline/readOle_xtrm_distances.py
experiments/zeiss/amir_baseline/recon_amir.py
experiments/zeiss_nsi_browser/browse_nsi.py
experiments/zeiss_nsi_browser/browse_shared.py
experiments/zeiss_nsi_browser/browse_xrm.py
mbirjax/__init__.py
mbirjax/_device_setup.py
mbirjax/_utils.py
mbirjax/bn256.py
mbirjax/cone_beam.py
mbirjax/denoising.py
mbirjax/hsnt.py
mbirjax/memory_stats.py
mbirjax/multiaxis_parallel.py
mbirjax/parallel_beam.py
mbirjax/parameter_handler.py
mbirjax/projectors.py
mbirjax/qggmrf.py
mbirjax/tomography_model.py
mbirjax/tomography_utils.py
mbirjax/translation_model.py
mbirjax/utilities.py
mbirjax/vcd_utils.py
mbirjax/vcls.py
mbirjax/viewer.py
mbirjax.egg-info/PKG-INFO
mbirjax.egg-info/SOURCES.txt
mbirjax.egg-info/dependency_links.txt
mbirjax.egg-info/requires.txt
mbirjax.egg-info/top_level.txt
mbirjax/_sharding/__init__.py
mbirjax/_sharding/thread_execution.py
mbirjax/_sharding/transfer.py
mbirjax/preprocess/__init__.py
mbirjax/preprocess/mar.py
mbirjax/preprocess/nsi.py
mbirjax/preprocess/pymbir.py
mbirjax/preprocess/segmentation.py
mbirjax/preprocess/stripe.py
mbirjax/preprocess/utilities.py
mbirjax/preprocess/zeiss_cb.py
mbirjax/preprocess/zeiss_tct.py
tests/conftest.py
tests/test_denoiser.py
tests/test_fbp_fdk.py
tests/test_hsnt.py
tests/test_preprocessing.py
tests/test_projectors.py
tests/test_prox.py
tests/test_qggmrf.py
tests/test_sharding_fbp.py
tests/test_sharding_hooks.py
tests/test_sharding_primitives.py
tests/test_sharding_scaffolding.py
tests/test_utilities.py
tests/test_vcd.py