pandas>=2.0.0
numpy>=1.24.0
scipy>=1.10.0
scikit-learn>=1.3.0
peewee>=3.17.0
biopython>=1.80
networkx>=3.0
requests>=2.28.0
tqdm>=4.65.0
click>=8.0.0
joblib>=1.3.0
pdbecif>=1.5
biotite>=1.0
pyarrow>=14.0.0
lightgbm>=4.0.0
openmm>=8.0.0
pdbfixer>=1.9
colabfold
melodia-py>=0.1.8
nglview>=3.0.0
numba>=0.50.0
prody>=2.4.0

[dev]
pytest
pytest-cov
mypy>=1.10.0
pre-commit>=3.7.0
black>=24.0.0
flake8>=7.0.0
bandit[toml]>=1.7.0

[full]
alphafold-colabfold
ipymolstar>=0.0.5

[gbm]
xgboost>=2.0.0
