LICENSE
MANIFEST.in
README.rst
requirements.txt
setup.py
pipemake_utils/__init__.py
pipemake_utils/add_eggnog_annotations.py
pipemake_utils/align.py
pipemake_utils/calc_pve.py
pipemake_utils/chunk_fasta.py
pipemake_utils/codon_alignment.py
pipemake_utils/confirm_cds_files.py
pipemake_utils/featureCounts_report.py
pipemake_utils/filter_gemma.py
pipemake_utils/iHS_manhattan_plot.py
pipemake_utils/label_tree.py
pipemake_utils/logger.py
pipemake_utils/longest_transcript.py
pipemake_utils/manhattan_plot.py
pipemake_utils/map_orthologs.py
pipemake_utils/misc.py
pipemake_utils/mk.py
pipemake_utils/model.py
pipemake_utils/model_inds.py
pipemake_utils/model_pop_files.py
pipemake_utils/models_ind.py
pipemake_utils/ped_phenotype_file.py
pipemake_utils/plot_pca.py
pipemake_utils/process_braker.py
pipemake_utils/process_juicebox.py
pipemake_utils/process_mitohifi.py
pipemake_utils/process_ncbi_annotations.py
pipemake_utils/seqDB.py
pipemake_utils/softmask.py
pipemake_utils/split_fasta.py
pipemake_utils/subset_fasta.py
pipemake_utils/subset_fastas.py
pipemake_utils/translate_seq_file.py
pipemake_utils/unchunk_blast.py
pipemake_utils/update_fasta.py
pipemake_utils/vcf.py
pipemake_utils/z_normalize.py
pipemake_utils.egg-info/PKG-INFO
pipemake_utils.egg-info/SOURCES.txt
pipemake_utils.egg-info/dependency_links.txt
pipemake_utils.egg-info/entry_points.txt
pipemake_utils.egg-info/requires.txt
pipemake_utils.egg-info/top_level.txt