setuptools>=80.9.0,<81
spatialdata>=0.5.0
spatialdata-io>=0.3.0
spatialdata-plot>=0.2.11
squidpy>=1.6.5
napari-spatialdata>=0.5.7

numpy>=2.2.6
scanpy>=1.10.4
anndata>=0.12.0
umap-learn>=0.5.7

pandas>=2.2.3
scipy>=1.13.1
scikit-learn>=1.7.2
numba>=0.62.1
llvmlite>=0.45.1
shapely>=2.1.1

matplotlib>=3.9.4
seaborn>=0.13.2
plotnine>=0.15.0
Pillow>=11.3.0

cell2location>=0.1.5

scvi-tools>=1.4.0

zarr>=2.18.7
h5py>=3.14.0
tifffile>=2025.8.28
imageio>=2.37.0
ome-zarr>=0.11.1

statsmodels>=0.14.5
Pint>=0.25
pyarrow>=21.0.0

click>=8.3.0
typer>=0.16.0
docopt>=0.6.2
PyYAML>=6.0.3
geosketch>=1.3
cell2location>=0.1.5
geopandas>=1.1.1
pydeseq2>=0.5.2
harmonypy>=0.0.10
igraph>=0.11.9
louvain>=0.8.2
